Active site opening and closure control translocation of multisubunit RNA polymerase




Malinen AM, Turtola M, Parthiban M, Vainonen L, Johnson MS, Belogurov GA

PublisherOXFORD UNIV PRESS

2012

Nucleic Acids Research

NUCLEIC ACIDS RESEARCH

NUCLEIC ACIDS RES

40

15

7442

7451

10

0305-1048

DOIhttps://doi.org/10.1093/nar/gks383

https://academic.oup.com/nar/article/40/15/7442/1207459

https://research.utu.fi/converis/portal/detail/Publication/3589464



Multisubunit RNA polymerase (RNAP) is the central information-processing enzyme in all cellular life forms, yet its mechanism of translocation along the DNA molecule remains conjectural. Here, we report direct monitoring of bacterial RNAP translocation following the addition of a single nucleotide. Time-resolved measurements demonstrated that translocation is delayed relative to nucleotide incorporation and occurs shortly after or concurrently with pyrophosphate release. An investigation of translocation equilibrium suggested that the strength of interactions between RNA 3' nucleotide and nucleophilic and substrate sites determines the translocation state of transcription elongation complexes, whereas active site opening and closure modulate the affinity of the substrate site, thereby favoring the post-and pre-translocated states, respectively. The RNAP translocation mechanism is exploited by the antibiotic tagetitoxin, which mimics pyrophosphate and induces backward translocation by closing the active site.


Last updated on 2024-26-11 at 14:25