A1 Refereed original research article in a scientific journal
Active site opening and closure control translocation of multisubunit RNA polymerase
Authors: Malinen AM, Turtola M, Parthiban M, Vainonen L, Johnson MS, Belogurov GA
Publisher: OXFORD UNIV PRESS
Publication year: 2012
Journal: Nucleic Acids Research
Journal name in source: NUCLEIC ACIDS RESEARCH
Journal acronym: NUCLEIC ACIDS RES
Volume: 40
Issue: 15
First page : 7442
Last page: 7451
Number of pages: 10
ISSN: 0305-1048
DOI: https://doi.org/10.1093/nar/gks383
Web address : https://academic.oup.com/nar/article/40/15/7442/1207459
Self-archived copy’s web address: https://research.utu.fi/converis/portal/detail/Publication/3589464
Multisubunit RNA polymerase (RNAP) is the central information-processing enzyme in all cellular life forms, yet its mechanism of translocation along the DNA molecule remains conjectural. Here, we report direct monitoring of bacterial RNAP translocation following the addition of a single nucleotide. Time-resolved measurements demonstrated that translocation is delayed relative to nucleotide incorporation and occurs shortly after or concurrently with pyrophosphate release. An investigation of translocation equilibrium suggested that the strength of interactions between RNA 3' nucleotide and nucleophilic and substrate sites determines the translocation state of transcription elongation complexes, whereas active site opening and closure modulate the affinity of the substrate site, thereby favoring the post-and pre-translocated states, respectively. The RNAP translocation mechanism is exploited by the antibiotic tagetitoxin, which mimics pyrophosphate and induces backward translocation by closing the active site.
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