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Active site opening and closure control translocation of multisubunit RNA polymerase




TekijätMalinen AM, Turtola M, Parthiban M, Vainonen L, Johnson MS, Belogurov GA

KustantajaOXFORD UNIV PRESS

Julkaisuvuosi2012

JournalNucleic Acids Research

Tietokannassa oleva lehden nimiNUCLEIC ACIDS RESEARCH

Lehden akronyymiNUCLEIC ACIDS RES

Vuosikerta40

Numero15

Aloitussivu7442

Lopetussivu7451

Sivujen määrä10

ISSN0305-1048

DOIhttps://doi.org/10.1093/nar/gks383

Verkko-osoitehttps://academic.oup.com/nar/article/40/15/7442/1207459

Rinnakkaistallenteen osoitehttps://research.utu.fi/converis/portal/detail/Publication/3589464


Tiivistelmä

Multisubunit RNA polymerase (RNAP) is the central information-processing enzyme in all cellular life forms, yet its mechanism of translocation along the DNA molecule remains conjectural. Here, we report direct monitoring of bacterial RNAP translocation following the addition of a single nucleotide. Time-resolved measurements demonstrated that translocation is delayed relative to nucleotide incorporation and occurs shortly after or concurrently with pyrophosphate release. An investigation of translocation equilibrium suggested that the strength of interactions between RNA 3' nucleotide and nucleophilic and substrate sites determines the translocation state of transcription elongation complexes, whereas active site opening and closure modulate the affinity of the substrate site, thereby favoring the post-and pre-translocated states, respectively. The RNAP translocation mechanism is exploited by the antibiotic tagetitoxin, which mimics pyrophosphate and induces backward translocation by closing the active site.


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