Natalia Battchikova
PhD, Adj. Prof.
Department of Biochemistry, Molecular Plant Biology laboratory natbat@utu.fi +358 29 450 4207 +358 50 441 3635 Tykistökatu 6 Turku Office: 6115 ORCID identifier: https://orcid.org/0000-0001-5176-3639 |
Proteomics; phosphoproteomics; cyanobacteria; NDH-1 complex; genetic engineering; cyanobacterial transformation
Born in Moscow, USSR.
Graduated from the Lomonosov Moscow State University.
Post-graduate student in the Institute of
Molecular Biology of USSR Academy of Sciences.
Got a PhD degree accepted by the Higher Attestation Commission
under the USSR Council of Ministers.
At present: Adjunct Professor of Molecular Biology appointed by the University of Turku, Finland
CyanoPhosphoProteomics: A search for novel signaling and regulatory
pathways in cyanobacteria
Research of photosynthetic organisms, with
its potential for development of a renewable and CO2-neutral energy system, has
become increasingly important in the last decade and attracted significant
attention of the society. Cyanobacteria
are among the most important candidates for the efficient production of targeted chemicals and fuels because they can produce desirable compounds using only sunlight, water and inorganic nutrients.
The present project intends to reveal in cyanobacteria hidden pathways of
regulation and signaling which are based on Ser/Thr and Tyr protein
phosphorylation. The
aim of the research is to investigate cyanobacterial
phosphoproteins in order to i) discover novel protein phosphorylation sites,
ii) study dynamics of protein phosphorylation events in response to various
environmental stimuli, iii) assign links between phosphoproteins and
corresponding kinases, and iv) find out how the phosphorylation signal is
processed and reflected in intracellular changes. In order to stimulate various signaling pathways, cells
will be challenged by environmental stresses (light/darkness, carbon, nitrogen
and other nutrients limitations). Phosphoproteins will be examined using innovative quantitative and targeted
mass spectrometry, molecular biology and genetic engineering methods aiming to
get novel insights into a complicated network of the post-translational
regulation and signaling. Exploration of cyanobacterial phosphoproteomes will
significantly expand our knowledge of fundamental processes occurring in
blue-green alga, such as oxygenic photosynthesis, nitrogen fixation, CO2
uptake, hydrogen production, cell differentiation, etc., and will lead to novel
technological applications.
Supervising of the PhD studies
Lectures:
SYST1010, “Systems biology lectures”, three
lectures (“Proteomics I: Proteomes and proteomic approaches. Preparation of
samples for mass spectrometry analysis”; “Proteomics II: Basics in mass
spectrometry of peptides”, and “Proteomics III: Quantitative proteomics and
PTMs” (2014, 2015, 2016, 2017, 2018)
SYST
5044 (KABI 5044), “Introduction to Bioenergetics”, the lecture “Proteomics in
photosynthesis” (2015, 2016, 2017, 2018)
SYST1100,
“ Bioinformatics”, the lecture “"Biological databases" and practical
exercises “Acquaintance with NCBI" (2014, 2015, 2016)
- SASP, a Senescence-Associated Subtilisin Protease, is involved in reproductive development and determination of silique number in Arabidopsis (2015)
- Journal of Experimental Botany
(A1 Refereed original research article in a scientific journal) - Transcriptomic and Proteomic Profiling of Anabaena sp Strain 90 under Inorganic Phosphorus Stress (2015)
- Applied and Environmental Microbiology
(A1 Refereed original research article in a scientific journal) - Characterization of ten H-2 producing cyanobacteria isolated from the Baltic Sea and Finnish lakes (2014)
- International Journal of Hydrogen Energy
(A1 Refereed original research article in a scientific journal) - Flavodiiron Protein Flv2/Flv4-Related Photoprotective Mechanism Dissipates Excitation Pressure of PSII in Cooperation with Phycobilisomes in Cyanobacteria (2014)
- Plant Physiology
(A1 Refereed original research article in a scientific journal) - Heterocyst-specific flavodiiron protein Flv3B enables oxic diazotrophic growth of the filamentous cyanobacterium Anabaena sp. PCC 7120 (2014)
- Proceedings of the National Academy of Sciences of the United States of America
(A1 Refereed original research article in a scientific journal) - Posttranslational Modifications of FERREDOXIN-NADP+ OXIDOREDUCTASE in Arabidopsis Chloroplasts. (2014)
- Plant Physiology
(A1 Refereed original research article in a scientific journal) - Proteomics in revealing the composition, acclimation and biogenesis of thylakoid membranes (2014) The Cell Biology of Cyanobacteria Natalia Battchikova, Eva-Mari Aro
(A3 Refereed book chapter or chapter in a compilation book) - Secondary metabolite from Nostoc XPORK14A inhibits photosynthesis and growth of Synechocystis PCC 6803 (2014)
- Plant, Cell and Environment
(A1 Refereed original research article in a scientific journal) - Flavodiiron proteins Flv1 and Flv3 enable cyanobacterial growth and photosynthesis under fluctuating light (2013)
- Proceedings of the National Academy of Sciences of the United States of America
(A1 Refereed original research article in a scientific journal) - Novel heterocyst-specific flavodiiron proteins in Anabaena sp PCC 7120 (2013)
- FEBS Letters
(A1 Refereed original research article in a scientific journal) - Structural model, physiology and regulation of Slr0006 in Synechocystis PCC 6803 (2013)
- Archives of Microbiology
(A1 Refereed original research article in a scientific journal) - Function of flavodiiron proteins in Anabaena PCC 7120 (2012)
- FEBS Journal
(Other publication) - Operon flv4-flv2 provides cyanobacteria with a novel photoprotection mechanism (2012)
- FEBS Journal
(Other publication) - Comparative metagenomics of microbial traits within oceanic viral communities (2011)
- ISME Journal
(A1 Refereed original research article in a scientific journal) - Cyanobacterial NDH-1 complexes: Novel insights and remaining puzzles (2011)
- BBA - Bioenergetics
(A2 Refereed review article in a scientific journal ) - Identification of Novel Ssl0352 Protein (NdhS), Essential for Efficient Operation of Cyclic Electron Transport around Photosystem I, in NADPH:plastoquinone Oxidoreductase (NDH-1) Complexes of Synechocystis sp. PCC 6803 (2011)
- Journal of Biological Chemistry
(A1 Refereed original research article in a scientific journal) - Marine cyanophages: tinkering with the electron transport chain (2011)
- ISME Journal
(A1 Refereed original research article in a scientific journal) - Membrane attachment of Slr0006 in Synechocystis sp PCC 6803 is determined by divalent ions (2011)
- Photosynthesis Research
(A1 Refereed original research article in a scientific journal) - Structure and Physiological Function of NDH-1 Complexes in Cyanobacteria (2011) Bioenergetic Processes of Cyanobacteria - From Evolutionary Singularity to Ecological Diversity Battchikova N, Aro E-M, Nixon PJ
(A3 Refereed book chapter or chapter in a compilation book) - Electron transfer routes in cyanobacterial thylakoid membranes - Impact on biohydrogen production (2010)
- BBA - Bioenergetics
(Other publication)