Irma Saloniemi
Ph.D., Docent
irma.saloniemi@utu.fi +358 29 450 4276 +358 46 923 0948 Vesilinnantie 5 Turku : 337 |
evolutionary biology; quantitative genetics; natural selection; biostatistics; transgenic organisms; glyphosate; sustainable agriculture, forestry, fishery; biosafety;
During my early studies in mathematics,statistics and computer science in Helsinki, I understood that besides interesting theoretical approaches, my need to make world better requires clear applications.
Fortunately, I found holistic ways to study biology during my studies at the
University of Chicago and University of Oregon.
I have spent most of my career in Turku, first as an ecologist and later as a geneticist. I
have been lucky enough to find some time for research while teaching genetics,
ecology and evolution. Especially studies that aim at mitigating anthropogenic evolutionary
effects in living systems like sustainable agriculture, potential risks of
biotechnology or climate change in northern forests are rewarding.
Statistical methods and their application to various biological systems has been an important part of my research beginning from early epidemiological studies on. Trophic interactions especially between birches
and their predator systems have been going on in Kevo and during my Academy of Finland project (50452) “Trophic-level and life-history consequences of transgenic resistance in plants”.
Together with Luke (PI Irma Kallio-Nyberg), I have studied effects of increasing temperatures, intensive fishing and hatchery rearing on life-history traits of salmonid fishes (salmon, trout and whitefish) in the Baltic Sea area.
Long-term co-operation with Kari Saikkonen and Marjo Helander on grasses and their endophytes together with other microbial interactions has been very productive. Especially chances for agricultural applications have been exciting.
Presently I have two main projects. One of them is participating in the glyphosate project of Marjo Helander as the PI. Proper experiments on several model organisms and crops are timely with the general,
and often loose, discussion on possible risks of glyphosate.
As the main present task, I am analyzing and documenting long-term data on adult trees that are growing in planned common garden settings (MRP, tree line gardens) in five locations in Kevo, Inari, Kittilä and Ruissalo. The trees in the gardens originate from single open-pollinated northern individuals. Combining old measurements on young trees and herbarium samples of them with present molecular methods and quantitative genetic analyses are likely to give valuable data on birch evolution and traits relevant for adapting to changing climate in subarctic areas.
During the last five years I have been the sole teacher for BIOL1301 Introductory Genetics, and I have taught most of BIOL2121 Evolutionary Biology, and BIOL3050 Bioinformatics for biologists. I have given many types of applied statistics course to biologist of all levels (including a year as a statistician at Department of statistics in Turku). Previously there was more emphasis on linear model applications to evolutionary and quantitative genetics using SAS, but presently I have been involved in introductory R courses.
While my teaching position was in ecology, I taught advanced level Evolutionary interaction, Ecological genetics. In genetics I have been teaching Population genetics, Evolutionary genetics, Evolutionary applications and Advanced Evolution reading courses. A comprehensive course in Agroecology and –evolution has been given several times together with doc. Marjo Helander from Ecology and people from Natural Resources Institute.
I like to share teaching and let the students to discover phenomenon and facts by themselves, if financial, administrative and time limitations allow.
- Effect of origin, sex and sea age of Atlantic salmon on their recapture rate after river ascent (2006)
- Journal of Applied Ichthyology
- Survival of reared Atlantic salmon and sea trout in relation to marine conditions of smolt year in the Baltic Sea (2006) Kallio-Nyberg, I (Kallio-Nyberg, Irma); Jutila, E (Jutila, Eero); Jokikokko, E (Jokikokko, Erkki); Saloniemi, I (Saloniemi, Irma)
- The survival of semi-wild, wild and hatchery-reared Atlantic salmon smolts of the Simojoki River in the Baltic Sea (2006)
- Journal of Fish Biology
- A short-lived herbivore on a long-lived host: tree resistance to herbivory depends on leaf age (2005) Ruusila, V (Ruusila, V); Morin, JP (Morin, JP); van Ooik, T (van Ooik, T); Saloniemi, I (Saloniemi, I); Ossipov, V (Ossipov, V); Haukioja, E (Haukioja, E)
- Distribution of fungal foliage and shoot pathogens in a natural Scots pine population in relation to environmental variables (2005)
- Canadian Journal of Forest Research
- Leaf surface traits: overlooked determinants of birch resistance to herbivores and foliar micro-fungi? (2005)
- Trees - Structure and Function
- Association between environmental factors, smolt size and the survival of wild and reared Atlantic salmon from the Simojoki River in the Baltic Sea (2004)
- Journal of Fish Biology
- Dispersal of females and differentiation between populations of Epirrita autumnata (Lepidoptera : Geometridae) inferred from variation in mitochondrial DNA (2004) Snall, N (Snall, N); Huoponen, K (Huoponen, K); Saloniemi, I (Saloniemi, I); Savontaus, ML (Savontaus, ML); Ruohomaki, K (Ruohomaki, K)
- Effects of snuff extract on epithelial growth and differentiation in vitro (2004)
- Oral Oncology
- Elohopeapäästöt kaatopaikoilta ympäristöön. Turun seutu: Isosuo, Topinoja, Peltola (2004) Sanna Pitkänen, Tuula Kohonen, Irma Saloniemi, Timo Vuorisalo
- Impacts of chitinase-transformed silver birch on leaf decomposition and soil organisms (2004)
- European Journal of Soil Biology
- Survival of reared and wild Atlantic salmon smolts: size matters more in bad years (2004)
- ICES Journal of Marine Science
- CD44v6 in developing, dysplastic and malignant oral epithelia (2003)
- Oral Oncology
- Differences in sea migration between wild and reared Atlantic salmon (Salmo salar L.) in the Baltic Sea (2003)
- Fisheries Research
- Cell proliferation and chromosomal changes in human ameloblastoma (2002)
- Cancer Genetics and Cytogenetics
- Micro-fungi and invertebrate herbivores on birch trees: fungal mediated plant-herbivore interactions or responses to host quality? (2002) Ahlholm, J (Ahlholm, J); Helander, M (Helander, M); Elamo, P (Elamo, P); Saloniemi, I (Saloniemi, I); Neuvonen, S (Neuvonen, S); Hanhimaki, S (Hanhimaki, S); Saikkonen, K (Saikkonen, K)
- Seasonally varying diet quality and the quantitative genetics of development time and body size in birch feeding insects (2001)
- Evolution
- Effect of maternal and paternal line on spatial and temporal marine distribution in Atlantic salmon (2000)
- Animal Behaviour
- Genetic and environmental variation in rust frequency on mature mountain birch trees (2000)
- Scandinavian Journal of Forest Research
- Birch family and environmental conditions affect endophytic fungi in leaves (1999)
- Oecologia