Irma Saloniemi
Ph.D., Docent
irma.saloniemi@utu.fi +358 29 450 4276 +358 46 923 0948 Vesilinnantie 5 Turku Office: 337 ORCID identifier: https://orcid.org/0000-0001-9083-4313 |
evolutionary biology; quantitative genetics; natural selection; biostatistics; transgenic organisms; glyphosate; sustainable agriculture, forestry, fishery; biosafety;
During my early studies in mathematics,statistics and computer science in Helsinki, I understood that besides interesting theoretical approaches, my need to make world better requires clear applications.
Fortunately, I found holistic ways to study biology during my studies at the
University of Chicago and University of Oregon.
I have spent most of my career in Turku, first as an ecologist and later as a geneticist. I
have been lucky enough to find some time for research while teaching genetics,
ecology and evolution. Especially studies that aim at mitigating anthropogenic evolutionary
effects in living systems like sustainable agriculture, potential risks of
biotechnology or climate change in northern forests are rewarding.
Statistical methods and their application to various biological systems has been an important part of my research beginning from early epidemiological studies on. Trophic interactions especially between birches
and their predator systems have been going on in Kevo and during my Academy of Finland project (50452) “Trophic-level and life-history consequences of transgenic resistance in plants”.
Together with Luke (PI Irma Kallio-Nyberg), I have studied effects of increasing temperatures, intensive fishing and hatchery rearing on life-history traits of salmonid fishes (salmon, trout and whitefish) in the Baltic Sea area.
Long-term co-operation with Kari Saikkonen and Marjo Helander on grasses and their endophytes together with other microbial interactions has been very productive. Especially chances for agricultural applications have been exciting.
Presently I have two main projects. One of them is participating in the glyphosate project of Marjo Helander as the PI. Proper experiments on several model organisms and crops are timely with the general,
and often loose, discussion on possible risks of glyphosate.
As the main present task, I am analyzing and documenting long-term data on adult trees that are growing in planned common garden settings (MRP, tree line gardens) in five locations in Kevo, Inari, Kittilä and Ruissalo. The trees in the gardens originate from single open-pollinated northern individuals. Combining old measurements on young trees and herbarium samples of them with present molecular methods and quantitative genetic analyses are likely to give valuable data on birch evolution and traits relevant for adapting to changing climate in subarctic areas.
During the last five years I have been the sole teacher for BIOL1301 Introductory Genetics, and I have taught most of BIOL2121 Evolutionary Biology, and BIOL3050 Bioinformatics for biologists. I have given many types of applied statistics course to biologist of all levels (including a year as a statistician at Department of statistics in Turku). Previously there was more emphasis on linear model applications to evolutionary and quantitative genetics using SAS, but presently I have been involved in introductory R courses.
While my teaching position was in ecology, I taught advanced level Evolutionary interaction, Ecological genetics. In genetics I have been teaching Population genetics, Evolutionary genetics, Evolutionary applications and Advanced Evolution reading courses. A comprehensive course in Agroecology and –evolution has been given several times together with doc. Marjo Helander from Ecology and people from Natural Resources Institute.
I like to share teaching and let the students to discover phenomenon and facts by themselves, if financial, administrative and time limitations allow.
- Betula pendula Roth. survival and growth in treeline is affected by genotype and environment (2025)
- Scientific Reports
(A1 Refereed original research article in a scientific journal) - Greenhouse study and interviews indicate glyphosate residue via feed-feces-fertilizer route is a risk for horticultural producers using manure-based fertilizer (2024)
- Environmental Sciences Europe
(A1 Refereed original research article in a scientific journal) - Does Glyphosate Affect the Human Microbiota? (2022)
- Life
(A1 Refereed original research article in a scientific journal) - Quantification of the Potential Impact of Glyphosate-Based Products on Microbiomes (2022)
- Journal of Visualized Experiments
(A1 Refereed original research article in a scientific journal) - Adaptation of bacteria to glyphosate: a microevolutionary perspective of the enzyme 5-enolpyruvylshikimate-3-phosphate synthase (2021)
- Environmental Microbiology Reports
(A1 Refereed original research article in a scientific journal) - Changes in age and maturity of anadromous whitefish (Coregonus lavaretus) in the northern Baltic Sea from 1998 to 2014 (2021)
- Aquatic Living Resources
(A1 Refereed original research article in a scientific journal) - Classification of the glyphosate target enzyme (5-enolpyruvylshikimate-3-phosphate synthase) for assessing sensitivity of organisms to the herbicide (2021)
- Journal of Hazardous Materials
(A1 Refereed original research article in a scientific journal) - Large inter-stock differences in catch size-at-age of mature Atlantic salmon observed by using genetic individual origin assignment from catch data (2021)
- PLoS ONE
(A1 Refereed original research article in a scientific journal) - Näkökulmaa bioturvallisuuteen ja biologisen riskin arviointiin (2021)
- Solubiologi
(D1 Article in a professional journal) - Female Preference and Adverse Developmental Effects of Glyphosate-Based Herbicides on Ecologically Relevant Traits in Japanese Quails (2020)
- Environmental Science and Technology
(A1 Refereed original research article in a scientific journal) - Glyphosate-based herbicides influence antioxidants, reproductive hormones and gut microbiome but not reproduction: A long-term experiment in an avian model (2020)
- Environmental Pollution
(A1 Refereed original research article in a scientific journal) - Increasing temperature associated with increasing grilse proportion and smaller grilse size of Atlantic salmon (2020)
- Journal of Applied Ichthyology
(A1 Refereed original research article in a scientific journal) - Different growth trends of whitefish (Coregonus lavaretus) forms in the northern Baltic Sea (2019)
- Journal of Applied Ichthyology
(A1 Refereed original research article in a scientific journal) - Effects of a glyphosate-based herbicide on soil animal trophic groups and associated ecosystem functioning in a northern agricultural field (2019)
- Scientific Reports
(A1 Refereed original research article in a scientific journal) - Glyphosate residues in soil affect crop plant germination and growth (2019)
- Scientific Reports
(A1 Refereed original research article in a scientific journal) - Phenotypic and genetic variation in natural populations of Festuca rubra s.l. in Europe (2019)
- Plant Ecology and Diversity
(A1 Refereed original research article in a scientific journal) - Anadromous trout threatened by whitefish gill-net fisheries in the northern Baltic Sea (2018)
- Journal of Applied Ichthyology
(A1 Refereed original research article in a scientific journal) - Epichloë endophyte effects on leaf blotch pathogen (Rhynchosporium sp.) of tall fescue (Schedonorus phoenix) vary among grass origin and environmental conditions (2018)
- Plant Ecology and Diversity
(A1 Refereed original research article in a scientific journal) - Factors affecting genetic and seed yield variability of Jatropha curcas (L.) across the globe: A review (2018)
- Energy for Sustainable Development
(A2 Refereed review article in a scientific journal ) - Glyphosate decreases mycorrhizal colonization and affects plant-soil feedback (2018)
- Science of the Total Environment
(A1 Refereed original research article in a scientific journal)