Manu Tamminen
PhD, Docent
manu.tamminen@utu.fi : 312 |
Molecular biology, Bioinformatics, Microbial Genetics, Microbial Ecology
- MSc, University of Turku, 2002
- PhD, University of Helsinki, 2011
- Post-doc, MIT, 2011-2013
- Post-doc, ETH Zürich, 2014-2017
- Adjunct professor, University of Turku, 2017
- Senior lecturer, University of Turku, 2017-
- Single cell genomics of bacteria and small eukaryotes
- Horizontal transfer of antibiotic resistance genes
- Quantitative applications of NGS
- SOMO1021 - Advanced genetics (2018)
- FYGE2242 - Laboratory course of microbial genetics (2018)
- BIOL1301 - Fundamentals of genetics (2018)
- FYGE 4031 - Laboratory methods in genetics (2018)
- BIOL3050 - Bioinformatics for biologists (2019)
- BIOL3200 - BSc seminars (2019)
- BIOL1301 - Fundamentals of genetics (2019)
- FYGE 4031 - Laboratory methods in genetics (2019)
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- Cellular heterogeneity in metabolism and associated microbiome of a non-model phytoflagellate (2025)
- ISME Journal
- High-Throughput Multiplex Detection of Antibiotic-Resistant Genes and Virulence Factors in Escherichia coli Using Digital Multiplex Ligation Assay (2025)
- Journal of Molecular Diagnostics
- Complete genome sequences of 30 bacterial species from a synthetic community (2024)
- Microbiology resource announcements
- Foundation species stabilize an alternative eutrophic state in nutrient disturbed ponds via selection on microbial community (2024)
- Frontiers in Microbiology
- Glyphosate residues in soil and phosphate fertilizer affect foliar endophytic microbial community composition and phytohormone levels in potato (2024)
- Phytobiomes journal
- The role of early life factors and green living environment in the development of gut microbiota in infancy : Population-based cohort study (2024)
- Environment International
- Glyphosate and a glyphosate-based herbicide affect bumblebee gut microbiota (2023)
- FEMS Microbiology Ecology
- Molecular Characterisation of Faecal Bacterial Assemblages Among Four Species of Syntopic Odonates (2023)
- Microbial Ecology
- Portable BLAST-like algorithm library and its implementations for command line, Python, and R (2023)
- PLoS ONE
- Influence of Microplastics on Microbial Structure, Function, and Mechanical Properties of Stream Periphyton (2022)
- Frontiers in Environmental Science
- Prider: multiplexed primer design using linearly scaling approximation of set coverage (2022)
- BMC Bioinformatics
- Quantitative online survey of self-perceived knowledge and knowledge gaps of medicines research and development among Finnish general public (2022)
- BMJ Open
- Wastewater constituents impact biofilm microbial community in receiving streams (2022)
- Science of the Total Environment
- Digital multiplex ligation assay for highly multiplexed screening of beta-lactamase-encoding genes in bacterial isolates (2020)
- Communications Biology
- Perinnöllinen sairastumisalttius kiinnostaa kansalaisia (2020)
- Duodecim
- Stream microbial communities and ecosystem functioning show complex responses to multiple stressors in wastewater (2020)
- Global Change Biology
- The evolution of competitive ability for essential resources (2020)
- Philosophical Transactions B: Biological Sciences
- Occurrence of sul and tet(M) genes in bacterial community in Japanese marine aquaculture environment throughout the year: Profile comparison with Taiwanese and Finnish aquaculture waters (2019)
- Science of the Total Environment
- Proteome evolution under non-substitutable resource limitation (vol 9, 4650, 2018) (2019)
- Nature Communications
- Uncovering microbial inter-domain interactions in complex communities (2019)
- Philosophical Transactions B: Biological Sciences
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