Manu Tamminen
PhD, Docent
manu.tamminen@utu.fi Office: 312 ORCID identifier: https://orcid.org/0000-0001-5891-7653 |
Areas of expertise
Molecular biology, Bioinformatics, Microbial Genetics, Microbial Ecology
Molecular biology, Bioinformatics, Microbial Genetics, Microbial Ecology
Biography
- MSc, University of Turku, 2002
- PhD, University of Helsinki, 2011
- Post-doc, MIT, 2011-2013
- Post-doc, ETH Zürich, 2014-2017
- Adjunct professor, University of Turku, 2017
- Senior lecturer, University of Turku, 2017-
Research
- Single cell genomics of bacteria and small eukaryotes
- Horizontal transfer of antibiotic resistance genes
- Quantitative applications of NGS
Teaching
- SOMO1021 - Advanced genetics (2018)
- FYGE2242 - Laboratory course of microbial genetics (2018)
- BIOL1301 - Fundamentals of genetics (2018)
- FYGE 4031 - Laboratory methods in genetics (2018)
- BIOL3050 - Bioinformatics for biologists (2019)
- BIOL3200 - BSc seminars (2019)
- BIOL1301 - Fundamentals of genetics (2019)
- FYGE 4031 - Laboratory methods in genetics (2019)
Publications 
1 of 2
- Cellular heterogeneity in metabolism and associated microbiome of a non-model phytoflagellate (2025)
- ISME Journal
(A1 Refereed original research article in a scientific journal) - Glyphosate and phosphate treatments in soil differentially affect crop microbiomes depending on species, tissue and growth stage (2025)
- Scientific ReportsFrontiers in Microbiology
(A1 Refereed original research article in a scientific journal) - (2025)
- Journal of Molecular DiagnosticsPhytobiomes journal
(A1 Refereed original research article in a scientific journal) - (2025)
- bioRxivEnvironment International
(Other publication) - Complete genome sequences of 30 bacterial species from a synthetic community (2024)
- Microbiology resource announcements
(A1 Refereed original research article in a scientific journal) - Foundation species stabilize an alternative eutrophic state in nutrient disturbed ponds via selection on microbial community (2024)
(A1 Refereed original research article in a scientific journal) - Glyphosate residues in soil and phosphate fertilizer affect foliar endophytic microbial community composition and phytohormone levels in potato (2024)
(A1 Refereed original research article in a scientific journal) - The role of early life factors and green living environment in the development of gut microbiota in infancy : Population-based cohort study (2024)
(A1 Refereed original research article in a scientific journal) - Glyphosate and a glyphosate-based herbicide affect bumblebee gut microbiota (2023)
- FEMS Microbiology EcologyBMJ Open
- Molecular Characterisation of Faecal Bacterial Assemblages Among Four Species of Syntopic OdonatesWastewater constituents impact biofilm microbial community in receiving streams2023
- Microbial EcologyScience of the Total Environment
(A1 Refereed original research article in a scientific journal) - (2023)
- PLoS ONEDuodecim
(A1 Refereed original research article in a scientific journal) - Influence of Microplastics on Microbial Structure, Function, and Mechanical Properties of Stream Periphyton (2022)
- Frontiers in Environmental Science
(A1 Refereed original research article in a scientific journal) - Prider: multiplexed primer design using linearly scaling approximation of set coverage (2022)
- BMC Bioinformatics
(A1 Refereed original research article in a scientific journal) - Quantitative online survey of self-perceived knowledge and knowledge gaps of medicines research and development among Finnish general public (2022)
(A1 Refereed original research article in a scientific journal) - (2022)
(A1 Refereed original research article in a scientific journal) - Digital multiplex ligation assay for highly multiplexed screening of beta-lactamase-encoding genes in bacterial isolates (2020)
- Communications Biology
(A1 Refereed original research article in a scientific journal) - Perinnöllinen sairastumisalttius kiinnostaa kansalaisia (2020)
(A1 Refereed original research article in a scientific journal) - Stream microbial communities and ecosystem functioning show complex responses to multiple stressors in wastewater (2020)
- Global Change Biology
(A1 Refereed original research article in a scientific journal) - The evolution of competitive ability for essential resources (2020)
- Philosophical Transactions B: Biological Sciences
(A1 Refereed original research article in a scientific journal) - Occurrence of sul and tet(M) genes in bacterial community in Japanese marine aquaculture environment throughout the year: Profile comparison with Taiwanese and Finnish aquaculture waters (2019)
- Science of the Total Environment
(A1 Refereed original research article in a scientific journal)
UTU Research Portal