Tomi Suomi
Medical Bioinformatics Centre tomi.suomi@utu.fi +358 29 450 3803 Tykistökatu 6 Turku |
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- Introducing untargeted data-independent acquisition for metaproteomics of complex microbial samples (2022)
- ISME Communications
- PhosPiR: an automated phosphoproteomic pipeline in R (2022)
- Briefings in Bioinformatics
- Statistical and machine learning methods to study human CD4+ T cell proteome profiles (2022)
- Immunology Letters
- Type 1 Diabetes in Children With Genetic Risk May Be Predicted Very Early With a Blood miRNA (2022)
- Diabetes Care
- Compressive stress-mediated p38 activation required for ERα + phenotype in breast cancer (2021)
- Nature Communications
- Data analysis tools for mass spectrometry proteomics (2021) Suomi Tomi
- Data-Independent Acquisition Mass Spectrometry in Metaproteomics of Gut Microbiota—Implementation and Computational Analysis (2020)
- Journal of Proteome Research
- A Data Analysis Protocol for Quantitative Data-Independent Acquisition Proteomics. (2019)
- Methods in Molecular Biology
- A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation (2018)
- Briefings in Bioinformatics
- A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection (2018)
- Nature Communications
- A systematic evaluation of normalization methods in quantitative label-free proteomics (2018)
- Briefings in Bioinformatics
- Phosphonormalizer: an R package for normalization of MS-based label-free phosphoproteomics (2018)
- Bioinformatics
- SimPhospho: a software tool enabling confident phosphosite assignment (2018)
- Bioinformatics
- Accurate detection of differential expression and splicing using low-level features (2017)
- Methods in Molecular Biology
- Enhanced differential expression statistics for data-independent acquisition proteomics (2017)
- Scientific Reports
- HIF prolyl hydroxylase PHD3 regulates translational machinery and glucose metabolism in clear cell renal cell carcinoma (2017)
- Cancer and Metabolism
- ROTS: An R package for reproducibility-optimized statistical testing (2017)
- PLoS Computational Biology
Laura L. Elo - Brief Isoflurane Anesthesia Produces Prominent Phosphoproteomic Changes in the Adult Mouse Hippocampus (2016)
- ACS Chemical Neuroscience
- Optimization of Statistical Methods Impact on Quantitative Proteomics Data (2015)
- Journal of Proteome Research
- Using peptide-level proteomics data for detecting differentially expressed proteins. (2015)
- Journal of Proteome Research
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