Tomi Suomi - UTU Research Portal - UTU Research Portal

Tomi Suomi

- Docent,
Faculty of Medicine (University of Turku)
- Postdoctoral Researcher,
Turku Bioscience Centre (Independent units)

Medical Bioinformatics Centre

tomi.suomi@utu.fi

+358 29 450 3803

Tykistökatu 6

Turku

ORCID identifier: https://orcid.org/0000-0003-3639-979X

Medical Bioinformatics Centre

Turku Bioscience

Publications

1 of 5

Clarifying the scope and capabilities of ROTS in differential expression analysis (2026)
- Bioinformatics
Suomi, Tomi; Kettunen, Jalmari; Pusa, Taneli; Elo, Laura L
(A1 Refereed original research article in a scientific journal)
Complete Data Analysis Workflow for Quantitative DIA Mass Spectrometry Using Nextflow (2026)
- Journal of Proteome Research
Perk, Mats; Pietilä, Sami; Välikangas, Tommi; Balint, Balazs; Suomi, Tomi; Elo, Laura L.
(A1 Refereed original research article in a scientific journal)
Joint modeling of longitudinal and time‐to‐event data for dynamic disease risk prediction using proteomics (2026)
- Protein Science
Lindén, Markus; Ammunét, Tea; Välikangas, Tommi; Elo, Laura L.; Suomi, Tomi
(A1 Refereed original research article in a scientific journal)
REACTOR: REgulon Activity analysis and Comparison Tool for single-cell transcriptOmics Research (2026)
- Bioinformatics
Lindén, Markus; Zúñiga Norman, Sebastián I.; Välikangas, Tommi; Junttila, Sini; Suomi, Tomi; Rytkönen, Kalle T; Elo, Laura L.
(A1 Refereed original research article in a scientific journal)
Therapeutic TG2 inhibition reverses systemic multiomic dysregulation in celiac disease (2026)
- BMC Medicine
Dotsenko, Valeriia; Le Hana, Hien; Rajić, Sonja; Moulder, Robert; Kettunen, Jalmari; Hirvonen, M. Karoliina; Dickens, Alex M; Hyötyläinen, Tuulia; Tewes, Bernhard; Zimmermann, Timo; Mohrbacher, Ralf; Suomi, Tomi; Lehtimäki, Terho; Lahesmaa, Riitta; Orešič, Matej; Elo, Laura L.; Raitoharju, Emma; Schuppan, Detlef; Mäki, Markku; Viiri, Keijo; on behalf of the CEC-3 Investigators
(A1 Refereed original research article in a scientific journal)
Transcriptomics of type 1 diabetes progression: a validation study in newly diagnosed patients (2026)
- EBioMedicine
Suomi, Tomi; Starskaia, Inna; Rasool, Omid; Kalim, Ubaid Ullah; Bruggraber, Sylvaine; Marcovecchio, M. Loredana; Hendricks, Emile; Overbergh, Lut; Peakman, Mark; Tree, Timothy; Brunak, Søren; Schulte, Anke M.; Mathieu, Chantal; Knip, Mikael; Lahesmaa, Riitta; Elo, Laura L.; On behalf of the INNODIA Consortium
(A1 Refereed original research article in a scientific journal)
Adaptive sequence alignment for metagenomic data analysis (2025)
- Computers in Biology and Medicine
Pietilä, Sami; Suomi, Tomi; Paulin, Niklas; Laiho, Asta; Sclivagnotis, Yannes S.; Elo, Laura L.
(A1 Refereed original research article in a scientific journal)
CellRomeR: an R package for clustering cell migration phenotypes from microscopy data (2025)
- Bioinformatics Advances
Kleino, Iivari; Perk, Mats; Sousa, António G G; Linden, Markus; Mathlin, Julia; Giesel, Daniel; Frolovaite, Paulina; Pietilä, Sami; Junttila, Sini; Suomi, Tomi; Elo, Laura L
(A1 Refereed original research article in a scientific journal)
Characterization of Visceral Adipose Tissue Proteome Reveals Metabolic Changes and Inflammatory Signatures in Severe Obesity (2025)
- Obesity
Dadson, Prince; Honka, Miikka‐Juhani; Suomi, Tomi; Rokka, Anne; Kauhanen, Saila; Salminen, Paulina; Helmiö, Mika; James, Peter; Elo, Laura L.; Olkkonen, Vesa M.; Nuutila Pirjo
(A1 Refereed original research article in a scientific journal)
Longitudinal pathway analysis using structural information with case studies in early type 1 diabetes (2025)
- Scientific Reports
Jaakkola, Maria K.; Kukkonen-Macchi, Anu; Suomi, Tomi; Elo, Laura L.
(A1 Refereed original research article in a scientific journal)