A1 Refereed original research article in a scientific journal
Information bottleneck in peptide conformation determination by x-ray absorption spectroscopy
Authors: Eronen Eemeli A., Vladyka Anton, Gerbon Florent, Sahle Christoph J., Niskanen Johannes
Publisher: IOP Publishing
Publication year: 2024
Journal: Journal of Physics Communications
Journal acronym: J. Phys. Commun.
Article number: 025001
Volume: 8
Issue: 2
DOI: https://doi.org/10.1088/2399-6528/ad1f73
Web address : https://iopscience.iop.org/article/10.1088/2399-6528/ad1f73
Self-archived copy’s web address: https://research.utu.fi/converis/portal/detail/Publication/386797904
We apply a recently developed technique utilizing machine learning for statistical analysis of computational nitrogen K-edge spectra of aqueous triglycine. This method, the emulator-based component analysis, identifies spectrally relevant structural degrees of freedom from a data set filtering irrelevant ones out. Thus tremendous reduction in the dimensionality of the ill-posed nonlinear inverse problem of spectrum interpretation is achieved. Structural and spectral variation across the sampled phase space is notable. Using these data, we train a neural network to predict the intensities of spectral regions of interest from the structure. These regions are defined by the temperature-difference profile of the simulated spectra, and the analysis yields a structural interpretation for their behavior. Even though the utilized local many-body tensor representation implicitly encodes the secondary structure of the peptide, our approach proves that this information is irrecoverable from the spectra. A hard x-ray Raman scattering experiment confirms the overall sensibility of the simulated spectra, but the predicted temperature-dependent effects therein remain beyond the achieved statistical confidence level.
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