Tapio Salakoski
 

Faculty of Science and Engineering

tapio.salakoski@utu.fi

+358 29 450 2708

+358 40 032 6978

Vesilinnantie 5

Turku

Areas of expertise
Artificial Intelligence, especially Language technology and Machine Learning
Bio and Health Informatics
Learning Analytics and Technology
Digital Humanities

Publications
  
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  • Computing Education Research in Finland  (2023)  Past, Present and Future of Computing Education Research: A Global Perspective Malmi Lauri, Hellas Arto, Ihantola Petri, Isomöttönen Ville, Jormanainen Ilkka, Kilamo Terhi, Knutas Antti, Korhonen Ari, Laakso Mikko-Jussi, López-Pernas Sonsoles, Poranen Timo, Salakoski Tapio, Suhonen Jarkko
    (    A3 Refereed book chapter or chapter in a compilation book)


  • Clustering Nursing Sentences - Comparing Three Sentence Embedding Methods  (2022)  
    • Medical informatics Europe
    Challenges of Trustable AI and Added-Value on Health Moen Hans, Suhonen Henry, Salanterä Sanna, Salakoski Tapio, Peltonen Laura-Maria
    (    A4 Refereed article in a conference publication )


  • Neural Network and Random Forest Models in Protein Function Prediction  (2022)  
    • IEEE/ACM Transactions on Computational Biology and Bioinformatics
     Hakala Kai, Kaewphan Suwisa, Björne Jari, Mehryary Farrokh, Moen Hans, Tolvanen Martti, Salakoski Tapio, Ginter Filip
    (    A1 Refereed original research article in a scientific journal)


  • Text Classification Model Explainability for Keyword Extraction - Towards Keyword-Based Summarization of Nursing Care Episodes  (2022)  
    • Studies in Health Technology and Informatics
    MEDINFO 2021: One World, One Health – Global Partnership for Digital Innovation Reunamo Akseli, Peltonen Laura-Maria, Mustonen Reetta, Saari Minttu, Salakoski Tapio, Salanterä Sanna, Moen Hans
    (    A4 Refereed article in a conference publication )


  • Universal Lemmatizer: A sequence-to-sequence model for lemmatizing Universal Dependencies treebanks  (2021)  
    • Natural Language Engineering
     Kanerva Jenna, Ginter Filip, Salakoski Tapio
    (    A1 Refereed original research article in a scientific journal)


  • Assisting nurses in care documentation: from automated sentence classification to coherent document structures with subject headings  (2020)  
    • Journal of Biomedical Semantics
     Moen Hans, Hakala Kai, Peltonen Laura-Maria, Matinolli Hanna-Maria, Suhonen Henry, Terho Kirsi, Danielsson-Ojala Riitta, Valta Maija, Ginter Filip, Salakoski Tapio, Salanterä Sanna.
    (    A1 Refereed original research article in a scientific journal)


  • Entity-pair embeddings for improving relation extraction in the biomedical domain  (2020)  
    • European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning
    ESANN 2020 - Proceedings, 28th European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning Mehryary F., Moen H., Salakoski T., Ginter F.
    (    A4 Refereed article in a conference publication )


  • Limits and Virtues of Educational Technology in Elementary School Mathematics  (2020)  
    • Journal of Educational Technology Systems
     Athanasios Christopoulos, Henri Kajasilta, Tapio Salakoski, Mikko-Jussi Laakso
    (    A1 Refereed original research article in a scientific journal)


  • Long term effects on technology enhanced learning: The use of weekly digital lessons in mathematics  (2020)  
    • Informatics in Education
     Einari Kurvinen, Erkki Kaila, Mikko-Jussi Laakso, Tapio Salakoski
    (    A1 Refereed original research article in a scientific journal)


  • Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module  (2020)  
    • Conference proceedings : Frontiers in Education Conference
    2020 IEEE Frontiers in Education Conference (FIE) Samuli Laato, Henna Vilppu, Juho Heimonen, Antti Hakkala, Jari Björne, Ali Farooq, Tapio Salakoski, Antti Airola
    (    A4 Refereed article in a conference publication )


  • Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods  (2020)  
    • Journal of the American Medical Informatics Association
     Hans Moen, Kai Hakala, Laura-Maria Peltonen, Henry Suhonen, Filip Ginter, Tapio Salakoski, Sanna Salanterä
    (    A1 Refereed original research article in a scientific journal)


  • Using early assessment performance as early warning signs to identify at-risk students in programming courses  (2020)  
    • Conference proceedings : Frontiers in Education Conference
    2020 IEEE Frontiers in Education Conference (FIE) Ashok Kumar Veerasamy, Daryl D’Souza, Mikko-Ville Apiola, Mikko-Jussi Laakso, Tapio Salakoski
    (    A4 Refereed article in a conference publication )


  • An Unsupervised Query Rewriting Approach Using N-gram Co-occurrence Statistics to Find Similar Phrases in Large Text Corpora  (2019)  
    • Linköping Electronic Conference Proceedings
    Proceedings of the 22nd Nordic Conference on Computational Linguistics (NoDaLiDa) Hans Moen, Laura-Maria Peltonen, Henry Suhonen, Hanna-Maria Matinolli, Riitta Mieronkoski, Kirsi Telen, Kirsi Terho, Tapio Salakoski, Sanna Salanterä
    (    A4 Refereed article in a conference publication )


  • Is Multilingual BERT Fluent in Language Generation?  (2019)  
    • Linköping Electronic Conference Proceedings
    Proceedings of the First NLPL Workshop on Deep Learning for Natural Language Processing Samuel Rönnqvist, Jenna Kanerva, Tapio Salakoski, Filip Ginter
    (    A4 Refereed article in a conference publication )


  • Pain process of patients with cardiac surgery — Semantic annotation of electronic patient record data  (2019)  
    • Journal of Clinical Nursing
     Heikkilä Kristiina, Axelin Anna, Peltonen Laura-Maria, Heimonen Juho, Anttila Pauliina, Viljanen Timo, Salakoski Tapio, Salanterä Sanna
    (    A1 Refereed original research article in a scientific journal)


  • Secondary use of electronic health records: Availability aspects in two Nordic countries  (2019)  
    • Health Information Management Journal
     Vikström A., Moen H., Moosavi SR, Salakoski T., Salanterä S.
    (    A1 Refereed original research article in a scientific journal)


  • Template-free Data-to-Text Generation of Finnish Sports News  (2019)  
    • Linköping Electronic Conference Proceedings
    Proceedings of the 22nd Nordic Conference on Computational Linguistics (NoDaLiDa), September 30–October 2, Turku, Finland Jenna Kanerva, Samuel Rönnqvist, Riina Kekki, Tapio Salakoski, Filip Ginter
    (    A4 Refereed article in a conference publication )


  • The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens  (2019)  
    • Genome Biology
     Naihui Zhou, Yuxiang Jiang, Timothy R. Bergquist, Alexandra J. Lee, Balint Z. Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George Georghiou, Huy N. Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet S. Rifaioglu, Alperen Dalkıran, Rengul Cetin Atalay, Chengxin Zhang, Rebecca L. Hurto, Peter L. Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M. Fernández, Branislava Gemovic, Vladimir R. Perovic, Radoslav S. Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad R.K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice C. McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A. Freitas, Magdalena Antczak, Fabio Fabris, Mark N. Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso E. Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan J. Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W. Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David T. Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, Jose Manuel Rodriguez, Michael L. Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel B. Roche, Jonas Reeb, David W. Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio C.E. Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage S. Black, Dane Jo, Erica Suh, Jonathan B. Dayton, Dallas J. Larsen, Ashton R. Omdahl, Liam J. McGuffin, Danielle A. Brackenridge, Patricia C. Babbitt, Jeffrey M. Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E.E. Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven E. Brenner, Christine A. Orengo, Constance J. Jeffery, Giovanni Bosco, Deborah A. Hogan, Maria J. Martin, Claire O’Donovan, Sean D. Mooney, Casey S. Greene, Predrag Radivojac, Iddo Friedberg
    (    A1 Refereed original research article in a scientific journal)


  • Unsupervised phrase-level query rewriting for assisting search in clinical free text  (2019)  
    • World congress on medical and health informatics
    MEDINFO 2019: Health and Wellbeing e-Networks for All. Proceedings of the 17th World Congress on Medical and Health Informatics Moen H., Peltonen L., Suhonen H., Koivumäki M., Salakoski T., Salanterä S.
    (    A4 Refereed article in a conference publication )


  • Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing  (2018)  Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018 Björne J, Salakoski T
    (    A4 Refereed article in a conference publication )



Last updated on 2023-12-07 at 12:31