Pekka Ruusuvuori

Assistant Professor, Institute of Biomedicine (Institute of Biomedicine)

pekka.ruusuvuori@utu.fi

+358 29 450 2132

+358 50 472 1830

Kiinamyllynkatu 10

Turku

Publications

STAGETOOL, a Novel Automated Approach for Mouse Testis Histological Analysis (2023)
- Endocrinology
Meikar Oliver, Majoral Daniel, Heikkinen Olli, Valkama Eero, Leskinen Sini, Rebane Ana, Ruusuvuori Pekka, Toppari Jorma, Makela Juho-Antti, Kotaja Noora
(Refereed journal article or data article (A1))
Artificial intelligence for diagnosis and Gleason grading of prostate cancer: the PANDA challenge (2022)
- Nature Medicine
Bulten W, Kartasalo K, Chen PHC, Ström P, Pinckaers H, Nagpal K, Cai YN, Steiner DF, van Boven H, Vink R, Hulsbergen-van de Kaa C, van der Laak J, Amin MB, Evans AJ, van der Kwast T, Allan R, Humphrey PA, Grönberg H, Samaratunga H, Delahunt B, Tsuzuki T, Häkkinen T, Egevad L, Demkin M, Dane S, Tan F, Valkonen M, Corrado GS, Peng L, Mermel CH, Ruusuvuori P, Litjens G, Eklund M; & the PANDA challenge consortium
(Refereed journal article or data article (A1))
Detection of perineural invasion in prostate needle biopsies with deep neural networks (2022)
- Virchows Archiv
Kartasalo Kimmo, Ström Peter, Ruusuvuori Pekka, Samaratunga Hemamali, Delahunt Brett, Tsuzuki Toyonori, Eklund Martin, Egevad Lars
(Refereed journal article or data article (A1))
Estimating diagnostic uncertainty in artificial intelligence assisted pathology using conformal prediction (2022)
- Nature Communications
Olsson Henrik, Kartasalo Kimmo, Mulliqi Nita, Capuccini Marco, Ruusuvuori Pekka, Samaratunga Hemamali, Delahunt Brett, Lindskog Cecilia, Janssen Emiel A.M., Blilie Anders, Egevad Lars, Spjuth Ola, Eklund Martin
(Refereed journal article or data article (A1))
H&E Multi-Laboratory Staining Variance Exploration with Machine Learning (2022)
- Applied Sciences
Prezja Fabi, Polonen Ilkka, Ayramo Sami, Ruusuvuori Pekka, Kuopio Teijo
(Refereed journal article or data article (A1))
miR-32 promotes MYC-driven prostate cancer (2022)
- Oncogenesis
Scaravilli Mauro, Koivukoski Sonja, Gillen Andrew, Bouazza Aya, Ruusuvuori Pekka, Visakorpi Tapio, Latonen Leena
(Refereed journal article or data article (A1))
Parametric modeling in biomedical image synthesis (2022) Biomedical Image Synthesis and Simulation: Methods and Applications Ruusuvuori Pekka
(Refereed article in compilation book (A3))
Spatial analysis of histology in 3D: quantification and visualization of organ and tumor level tissue environment (2022)
- Heliyon
Ruusuvuori Pekka, Valkonen Masi, Kartasalo Kimmo, Valkonen Mira, Visakorpi Tapio, Nykter Mira, Latonen Leena
(Refereed journal article or data article (A1))
Artificial Intelligence for Diagnosis and Gleason Grading of Prostate Cancer in Biopsies-Current Status and Next Steps (2021)
- European Urology Focus
Kartasalo Kimmo, Bulten Wouter, Delahunt Brett, Chen Po-Hsuan Cameron, Pinckaers Hans, Olsson Henrik, Ji Xiaoyi, Mulliqi Nita, Samaratunga Hemamali, Tsuzuki Toyonori, Lindberg Johan, Rantalainen Mattias, Wählby Carolina, Litjens Geert, Ruusuvuori Pekka, Egevad Lars, Eklund Martin
(Refereed review article in scientific journal (A2))
Building a central repository landmarks a new era for artificial intelligence-assisted digital pathology development in Europe (2021)
- European Journal of Cancer
Latonen Leena, Ruusuvuori Pekka
(Article or data-article in scientific journal (B1))
Convolutional Neural Network-Based Artificial Intelligence for Classification of Protein Localization Patterns (2021)
- Biomolecules
Liimatainen Kaisa, Huttunen Riku, Latonen Leena, Ruusuvuori Pekka
(Refereed journal article or data article (A1))
Generalized fixation invariant nuclei detection through domain adaptation based deep learning (2021)
- IEEE Journal of Biomedical and Health Informatics
Valkonen Mira, Högnäs Gunilla, Bova G Steven, Ruusuvuori Pekka
(Refereed journal article or data article (A1))
Interobserver reproducibility of perineural invasion of prostatic adenocarcinoma in needle biopsies (2021)
- Virchows Archiv
Egevad Lars, Delahunt Brett, Samaratunga Hemamali, Tsuzuki Toyonori, Olsson Henrik, Ström Peter, Lindskog Cecilia, Häkkinen Tomi, Kartasalo Kimmo, Eklund Martin, Ruusuvuori Pekka
(Refereed journal article or data article (A1))
OpenPhi: an interface to access Philips iSyntax whole slide images for computational pathology (2021)
- Bioinformatics
Mulliqi Nita, Kartasalo Kimmo, Olsson Henrik, Ji Xiaoyi, Egevad Lars, Eklund Martin, Ruusuvuori Pekka
(Article or data-article in scientific journal (B1))
Predicting Molecular Phenotypes from Histopathology Images: A Transcriptome-Wide Expression-Morphology Analysis in Breast Cancer (2021)
- Cancer Research
Wang Yinxi, Kartasalo Kimmo, Weitz Philippe, Acs Balazs, Valkonen Masi, Larsson Christer, Ruusuvuori Pekka, Hartman Johan, Rantalainen Mattias
(Refereed journal article or data article (A1))
The emerging role of artificial intelligence in the reporting of prostate pathology (2021)
- Pathology
Egevad Lars, Delahunt Brett, Samaratunga Hemamali, Tsuzuki Toyonori, Yamamoto Yoichiro, Yaxley John, Ruusuvuori Pekka, Kartasalo Kimmo, Eklund Martin
(Article or data-article in scientific journal (B1))
Virtual reality for 3D histology: multi-scale visualization of organs with interactive feature exploration (2021)
- BMC Cancer
Liimatainen Kaisa, Latonen Leena, Valkonen Masi, Kartasalo Kimmo, Ruusuvuori Pekka
(Refereed journal article or data article (A1))
ANHIR: Automatic Non-Rigid Histological Image Registration Challenge (2020)
- IEEE Transactions on Medical Imaging
Borovec J, Kybic J, Arganda-Carreras I, Sorokin DV, Bueno G, Khvostikov AV, Bakas S, Chang EIC, Heldmann S, Kartasalo K, Latonen L, Lotz J, Noga M, Pati S, Punithakumar K, Ruusuvuori P, Skalski A, Tahmasebi N, Valkonen M, Venet L, Wang YZ, Weiss N, Wodzinski M, Xiang Y, Xu Y, Yan Y, Yushkevich P, Zhao SY, Munoz-Barrutia A, Munoz-Barrutia A
(Refereed journal article or data article (A1))
Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1-positive pediatric leukemia identifies drug-targetable transcription factor activities (2020)
- Genome Medicine
Juha Mehtonen, Susanna Teppo, Mari Lahnalampi, Aleksi Kokko, Riina Kaukonen, Laura Oksa, Maria Bouvy-Liivrand, Alena Malyukova, Artturi Mäkinen, Saara Laukkanen, Petri I. Mäkinen, Samuli Rounioja, Pekka Ruusuvuori, Olle Sangfelt, Riikka Lund, Tapio Lönnberg, Olli Lohi, Merja Heinäniemi
(Refereed journal article or data article (A1))