Santosh Lamichhane
 Academy Research fellow, Adj Prof (Docent), Group Leader,Infection and Immunity Unit at the Institute of Biomedicine.


santosh.lamichhane@utu.fi



Link to Research Group

ORCID-tunnistehttps://orcid.org/0000-0002-9292-3595

My Research Group

Group member



Asiantuntijuusalueet
Lipidomics/Metabolomics-
Gut microbial metabolism-
Multivariate data analysis
Reverse Metabolomics- Molecular networking


Tutkimusyhteisö tai tutkimusaihe
Lamichhane Group- Gut Microbiomics-The focus of our group is to explore microbial derived small molecules in the gut and their influence on human health.

Biografia

Santosh Lamichhane is the Principal Investigator in the Infection and Immunity Unit at the Institute of Biomedicine. He is a Research Council of Finland Academy Research Fellow and holds the title of Docent (equivalent to Associate Professor) in Metabolomics at the Department of Life Technologies, University of Turku. As part of his research fellowship, Dr. Lamichhane investigates the relationship between gut microbiota, lipids, and their clinical effects in early childhood.

Lamichhane was a Visiting Researcher at The Dorrestein Lab, University of California, San Diego, where he gained expertise in reverse and repository-scale metabolomics to better understand microbial chemistry and its influence on human metabolism.





Tutkimus

Lamichhane's research interest lies in the interface of human health, diet and gut microbial activity. He heads a research group (Gut Microbiomics) at Intitute of Biomedicine, Faculty of Medicine. https://sites.utu.fi/gutmicrobiomics/

The focus of his group is to explore microbial derived small molecules in the gut and their influence on human health. By integrating advanced laboratory techniques such as metabolomics, gut organoids, and microbial cultures with computational analysis, we investigate the chemical interactions between gut microbes and their impact on the host.



Opetus

Metabolomics lecture in Systems biology (SYS21012), Modern biotechnologies and bioinformatics course (BIOT1524), Bioanalytical Techniques (CHEMI6429) at University of Turku.




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  • Microbiome-derived bile acid signatures in early life and their association with islet autoimmunityDeep learning facilitates multi-data type analysis and predictive biomarker discovery in cancer precision medicine  (2026)  
    • Nature CommunicationsMetabolites
     Lamichhane, Santosh; Dickens, Alex M.; Buchacher, Tanja; Lou, Tianai; Charron-Lamoureux, Vincent; Kattelus, Roosa; Karmacharya, Pragya; Pinto da Silva, Lucas; Kråkström, Matilda; Rasool, Omid; Sen, Partho; Walker, Corinn; Patan, Abubaker; Gentry, Emily C.; Zuffa, Simone; Arzoomand, Aron; Lakshmikanth, Tadepally; Mikeš, Jaromir; Mebrahtu, Aman; Vatanen, Tommi; Raffatellu, Manuela; Zengler, Karsten; Hyötyläinen, Tuulia; Xavier, Ramnik J.; Brodin, Petter; Lahesmaa, Riitta; Dorrestein, Pieter C.; Knip, Mikael; Orešič, MatejA1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä


  • Pre- and postnatal maternal psychological distress and the metabolomic profile of human milkPrenatal exposure to persistent organic pollutants modulates the metabolism and gut microbiota of the offspring  (2026)  
    • Journal of Nutrition
     Ryan, Niamh; Sundekilde, Ulrik Kramer; Dickens, Alex M.; Kalant, Henna-Maria; Leahy-Warren, Patricia; Philpott, Lloyd; Mulcahy, Helen; Lamichhane, Santosh; Isokääntä, Heidi; Perasto, Laura; Tarro, Saija; Karlsson, Hasse; Karlsson, Linnea; O’Mahony, Siobhain M.; Aatsinki, Anna-Katariina
    (
    A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


  •   (2026)  
    • Environment International
     Lamichhane, Santosh; Salihovic, Samira; Sinioja, Tim; Virtanen, Suvi M.; Vatanen, Tommi; Orešič, Matej; Knip, Mikael; Hyötyläinen, Tuulia
    (
    A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


  •   (2025)  
    • Nature ProtocolsiScience
     Charron-Lamoureux, Vincent; Mannochio-Russo, Helena; Lamichhane, Santosh; Xing, Shipei; Patan, Abubaker; Gomes, Paulo Wender Portal; Rajkumar, Prajit; Deleray, Victoria; Caraballo-Rodriguez, Andres Mauricio; Chua, Kee Voon; Lee, Lye Siang; Liu, Zhao; Ching, Jianhong; Wang, Mingxun; Dorrestein, Pieter C.

    (
    A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


  • A resource to empirically establish drug exposure records directly from untargeted metabolomics data  (2025)  
    • Nature CommunicationsCell
     Zhao, Haoqi Nina; Kvitne, Kine Eide; Brungs, Corinna; Mohan, Siddharth; Charron-Lamoureux, Vincent; Bittremieux, Wout; Tang, Runbang; Schmid, Robin; Lamichhane, Santosh; Xing, Shipei; El Abiead, Yasin; Andalibi, Mohammadsobhan S.; Mannochio-Russo, Helena; Ambre, Madison; Avalon, Nicole E.; Bryant, MacKenzie; Burnett, Lindsey A.; Caraballo-Rodríguez, Andrés Mauricio; Maya, Martin Casas; Chin, Loryn; Corominas, Lluís; Ellis, Ronald J.; Franklin, Donald; Girod, Sagan; Gomes, Paulo Wender, P.; Hansen, Lauren; Heaton, Robert K.; Iudicello, Jennifer E.; Jarmusch, Alan K.; Khatib, Lora; Letendre, Scott; Magyari, Sarolt; McDonald, Daniel; Mohanty, Ipsita; Cumsille, Andrés; Moore, David J.; Rajkumar, Prajit; Ross, Dylan H.; Sapre, Harshada; Shahneh, Mohammad Reza Zare; Gil-Solsona, Ruben; Thomas, Sydney P.; Tribelhorn, Caitlin; Tubb, Helena M.; Walker, Corinn; Wang, Crystal X.; Zemlin, Jasmine; Zuffa, Simone; Wishart, David S.; Gago-Ferrero, Pablo; Kaddurah-Daouk, Rima; Wang, Mingxun; Raffatellu, Manuela; Zengler, Karsten; Pluskal, Tomáš; Xu, Libin; Knight, Rob; Tsunoda, Shirley M.; Dorrestein, Pieter C.
    (
    A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


  • Dynamics of gut metabolome and microbiota maturation during early life  (2025)  
       Aatsinki, Anna-Katariina; Lamichhane, Santosh; Isokääntä, Heidi; Sen, Partho; Kråkström, Matilda; Amaral Alves, Marina; Keskitalo, Anniina; Munukka, Eveliina; Karlsson, Hasse; Perasto, Laura; Lukkarinen, Minna; Oresic, Matej; Kailanto, Henna-Maria; Karlsson, Linnea; Lahti, Leo; Dickens, Alex M.
      (
      A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


    • Intra- and inter-individual variation of the human lipidome  (2025)  
      • Trends in Analytical Chemistry
       Anh, Nguyen Hoang; Beyene, Habtamu B.; Mocciaro, Gabriele; Hahnefeld, Lisa; Lamichhane, Santosh; Fabritius, Mikael; Avela, Henri; Wang, Yuqin; Dickens, Alex M.; Gurke, Robert; Yang, Baoru; Griffiths, William J.; Hyötyläinen, Tuulia; Meikle, Peter J.; Orešič, Matej
      (
      A2 Vertaisarvioitu katsausartikkeli tieteellisessä lehdessä)


    • The microbiome diversifies long-to short-chain fatty acid-derived N-acyl lipids  (2025)  
         Mannochio-Russo, Helena; Charron-Lamoureux, Vincent; van Faassen, Martijn; Lamichhane, Santosh; Nunes, Wilhan D. Goncalves; Deleray, Victoria; Ayala, Adriana, V; Tanaka, Yuichiro; Patan, Abubaker; Vittali, Kyle; Rajkumar, Prajit; El Abiead, Yasin; Zhao, Haoqi Nina; Gomes, Paulo Wender Portal; Mohanty, Ipsita; Lee, Carlynda; Sund, Aidan; Sharma, Meera; Liu, Yuanhao; Pattynama, David; Walker, Gregory T.; Norton, Grant J.; Khatib, Lora; Andalibi, Mohammadsobhan S.; Wang, Crystal X.; Ellis, Ronald J.; Moore, David J.; Iudicello, Jennifer E.; Franklin Jr, Donald; Letendre, Scott; Chin, Loryn; Walker, Corinn; Renwick, Simone; Zemlin, Jasmine; Meehan, Michael J.; Song, Xinyang; Kasper, Dennis; Burcham, Zachary; Kim, Jane J.; Kadakia, Sejal; Raffatellu, Manuela; Bode, Lars; Chu, Hiutung; Zengler, Karsten; Wang, Mingxun; Siegel, Dionicio; Knight, Rob; Dorrestein, Pieter C.
        (
        A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


      •   (2024)  
        • Analytical Chemistry
         Isokääntä, Heidi; Pinto da Silva, Lucas; Karu, Naama; Kallonen, Teemu; Aatsinki, Anna-Katariina; Hankemeier, Thomas; Schimmel, Leyla; Diaz, Edgar; Hyötyläinen, Tuulia; Dorrestein, Pieter C.; Knight, Rob; Orešič, Matej; Kaddurah-Daouk, Rima; Dickens, Alex M.; Lamichhane, Santosh
        (
        A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


      • IL-22 resolves MASLD via enterocyte STAT3 restoration of diet-perturbed intestinal homeostasis  (2024)  
        • Cell Metabolism
         Zhang, Peng; Liu, Junlai; Lee, Allen; Tsaur, Irene; Ohira, Masafumi; Duong, Vivian; Vo, Nicholas; Watari, Kosuke; Su, Hua; Kim, Ju Youn; Gu, Li; Zhu, Mandy; Shalapour, Shabnam; Hosseini, Mojgan; Bandyopadhyay, Gautam; Zeng, Suling; Llorente, Cristina; Zhao, Haoqi Nina; Lamichhane, Santosh; Mohan, Siddharth; Dorrestein, Pieter C.; Olefsky, Jerrold M.; Schnabl, Bernd; Soroosh, Pejman; Karin, Michael
        (
        A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


      •   (2024)  
        • Development and PsychopathologyInternational Journal of Molecular Sciences
         Huovinen, Venla; Aatsinki, Anna-Katariina; Kataja, Eeva-Leena; Munukka, Eveliina; Keskitalo, Anniina; Lamichhane, Santosh; Raunioniemi, Peppi; Bridgett, David J.; Lahti, Leo; O’Mahony, Siobhain M.; Dickens, Alex; Korja, Riikka; Karlsson, Hasse; Nolvi, Saara; Karlsson, Linnea
        (
        A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


      • Multiplatform metabolomic interlaboratory study of a whole human stool candidate reference material from omnivore and vegan donors  (2024)  
        • Metabolomics
         Cruz, Abraham Kuri; Alves, Marina Amaral; Andresson, Thorkell; Bayless, Amanda L.; Bloodsworth, Kent J.; Bowden, John A.; Bullock, Kevin; Burnet, Meagan C.; Carnevale Neto, Fausto; Choy, Angelina; Clish, Clary B.; Couvillion, Sneha P.; Cumeras, Raquel; Dailey, Lucas; Dallmann, Guido; Davis, W. Clay; Deik, Amy A.; Dickens, Alex M.; Djukovic, Danijel; Dorrestein, Pieter C.; Eder, Josie G.; Fiehn, Oliver; Flores, Roberto; Gika, Helen; Hagiwara, Kehau A.; Pham, Tuan Hai; Harynuk, James J.; Aristizabal-Henao, Juan J.; Hoyt, David W.; Jean-Francois, Focant; Krakstroem, Matilda; Kumar, Amit; Kyle, Jennifer E.; Lamichhane, Santosh; Li, Yuan; Nam, Seo Lin; Mandal, Rupasri; de la Mata, A. Paulina; Meehan, Michael J.; Meikopoulos, Thomas; Metz, Thomas O.; Mouskeftara, Thomai; Munoz, Nathalie; Gowda, G. A. Nagana; Orešic, Matej; Panitchpakdi, Morgan; Pierre-Hugues, Stefanuto; Raftery, Daniel; Rushing, Blake; Schock, Tracey; Seifried, Harold; Servetas, Stephanie; Shen, Tong; Sumner, Susan; Carrillo, Kieran S. Tarazona; Thibaut, Dejong; Trejo, Jesse B.; Van Meulebroek, Lieven; Vanhaecke, Lynn; Virgiliou, Christina; Weldon, Kelly C.; Wishart, David S.; Zhang, Lu; Zheng, Jiamin; Da Silva, Sandra
        (
        A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


      • Serum proteomics of mother-infant dyads carrying HLA-conferred type 1 diabetes risk  (2024)  
        • iScienceEnvironment International
         Bhosale, Santosh D.; Moulder, Robert; Suomi, Tomi; Ruohtula, Terhi; Honkanen, Jarno; Virtanen, Suvi M.; Ilonen, Jorma; Elo, Laura L.; Knip, Mikael; Lahesmaa, Riitta
        (
        A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


      •   (2023)  
        • Frontiers in Molecular Biosciences
         Dickens Alex M, Johnson Tory P, Lamichhane Santosh, Kumar Anupama, Pardo Carlos A, Gutierrez Erie G, Haughey Norman, Cervenka Mackenzie C
        (
        A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


      • Circulating metabolic signatures of rapid and slow progression to type 1 diabetes in islet autoantibody-positive children  (2023)  
        • Frontiers in Endocrinology
         Lamichhane Santosh, Sen Partho, Dickens Alex M, Kråkström Matilda, Ilonen Jorma, Lempainen Johanna, Hyöty Heikki, Lahesmaa Riitta, Veijola Riitta, Toppari Jorma, Hyötyläinen Tuulia, Knip Mikael, Orešič Matej

        (
        A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


      • Classification of Common Food Lipid Sources Regarding Healthiness Using Advanced Lipidomics: A Four-Arm Crossover Study  (2023)  
           Monfort-Pires Milena, Lamichhane Santosh, Alonso Cristina, Egelandsdal Bjørg, Oresic Matej, Jordahl Vilde Overrein, Skjolsvold Oda, Perez-Ruiz Irantzu, Blanco Maria Encarnación, Skeie Siv, Martins Catia, Haug Anna
          (
          A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


        •   (2023)  
          • Computational and Structural Biotechnology Journal
           Mathema Vivek Bhakta, Sen Partho, Lamichhane Santosh, Orešič Matej, Khoomrung Sakda
          (
          A2 Vertaisarvioitu katsausartikkeli tieteellisessä lehdessä)


        •   (2023)  
             Kråkström Matilda, Dickens Alex M, Amaral Alves Marina, Forssten Sofia D, Ouwehand Arthur C, Hyötyläinen Tuulia, Orešič Matej, Lamichhane Santosh
            (
            A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


          • Impact of exposure to per- and polyfluoroalkyl substances on fecal microbiota composition in mother-infant dyads  (2023)  
               Lamichhane Santosh, Härkönen Taina, Vatanen Tommi, Hyötyläinen Tuulia, Knip Mikael, Orešič Matej
              (
              A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )


            • Recent advances towards mass spectrometry-based clinical lipidomics  (2023)  
              • Current Opinion in Chemical Biology
               Salihovic Samira, Lamichane Santosh, Hyötyläinen Tuulia, Orešič Matej
              (
              A2 Vertaisarvioitu katsausartikkeli tieteellisessä lehdessä)



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