Santosh Lamichhane
 Academy Research fellow, Adj Prof (Docent), Group Leader,Infection and Immunity Unit at the Institute of Biomedicine.


santosh.lamichhane@utu.fi



Link to Research Group

https://orcid.org/0000-0002-9292-3595

My Research Group

Group member




Lipidomics/Metabolomics-
Gut microbial metabolism-
Multivariate data analysis
Reverse Metabolomics- Molecular networking



Lamichhane Group- Gut Microbiomics-The focus of our group is to explore microbial derived small molecules in the gut and their influence on human health.


Santosh Lamichhane is the Principal Investigator in the Infection and Immunity Unit at the Institute of Biomedicine. He is a Research Council of Finland Academy Research Fellow and holds the title of Docent (equivalent to Associate Professor) in Metabolomics at the Department of Life Technologies, University of Turku. As part of his research fellowship, Dr. Lamichhane investigates the relationship between gut microbiota, lipids, and their clinical effects in early childhood.

Lamichhane was a Visiting Researcher at The Dorrestein Lab, University of California, San Diego, where he gained expertise in reverse and repository-scale metabolomics to better understand microbial chemistry and its influence on human metabolism.






Lamichhane's research interest lies in the interface of human health, diet and gut microbial activity. He heads a research group (Gut Microbiomics) at Intitute of Biomedicine, Faculty of Medicine. https://sites.utu.fi/gutmicrobiomics/

The focus of his group is to explore microbial derived small molecules in the gut and their influence on human health. By integrating advanced laboratory techniques such as metabolomics, gut organoids, and microbial cultures with computational analysis, we investigate the chemical interactions between gut microbes and their impact on the host.




Metabolomics lecture in Systems biology (SYS21012), Modern biotechnologies and bioinformatics course (BIOT1524), Bioanalytical Techniques (CHEMI6429) at University of Turku.




  
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  • Association between infant and toddler gut microbiota composition and later executive functioning  (2026)  
    • Development and Psychopathology
     Huovinen, Venla; Aatsinki, Anna-Katariina; Eskola, Eeva; Benedetti, Giulio; Isokääntä, Heidi; Nordenswan, Elisabeth; Munukka, Eveliina; Lamichhane, Santosh; Yada, Akie; O’Mahony, Siobhain M.; Dickens, Alex; Lahti, Leo; Karlsson, Hasse; Korja, Riikka; Nolvi, Saara; Karlsson, Linnea


  • Microbiome-derived bile acid signatures in early life and their association with islet autoimmunity  (2026)  
    • Nature Communications
     Lamichhane, Santosh; Dickens, Alex M.; Buchacher, Tanja; Lou, Tianai; Charron-Lamoureux, Vincent; Kattelus, Roosa; Karmacharya, Pragya; Pinto da Silva, Lucas; Kråkström, Matilda; Rasool, Omid; Sen, Partho; Walker, Corinn; Patan, Abubaker; Gentry, Emily C.; Zuffa, Simone; Arzoomand, Aron; Lakshmikanth, Tadepally; Mikeš, Jaromir; Mebrahtu, Aman; Vatanen, Tommi; Raffatellu, Manuela; Zengler, Karsten; Hyötyläinen, Tuulia; Xavier, Ramnik J.; Brodin, Petter; Lahesmaa, Riitta; Dorrestein, Pieter C.; Knip, Mikael; Orešič, Matej


  • Pre- and postnatal maternal psychological distress and the metabolomic profile of human milk  (2026)  
    • Journal of Nutrition
     Ryan, Niamh; Sundekilde, Ulrik Kramer; Dickens, Alex M.; Kalant, Henna-Maria; Leahy-Warren, Patricia; Philpott, Lloyd; Mulcahy, Helen; Lamichhane, Santosh; Isokääntä, Heidi; Perasto, Laura; Tarro, Saija; Karlsson, Hasse; Karlsson, Linnea; O’Mahony, Siobhain M.; Aatsinki, Anna-Katariina


  • Prenatal exposure to persistent organic pollutants modulates the metabolism and gut microbiota of the offspring  (2026)  
    • Environment International
     Lamichhane, Santosh; Salihovic, Samira; Sinioja, Tim; Virtanen, Suvi M.; Vatanen, Tommi; Orešič, Matej; Knip, Mikael; Hyötyläinen, Tuulia


  • A guide to reverse metabolomics—a framework for big data discovery strategy  (2025)  
    • Nature Protocols
     Charron-Lamoureux, Vincent; Mannochio-Russo, Helena; Lamichhane, Santosh; Xing, Shipei; Patan, Abubaker; Gomes, Paulo Wender Portal; Rajkumar, Prajit; Deleray, Victoria; Caraballo-Rodriguez, Andres Mauricio; Chua, Kee Voon; Lee, Lye Siang; Liu, Zhao; Ching, Jianhong; Wang, Mingxun; Dorrestein, Pieter C.


  • A resource to empirically establish drug exposure records directly from untargeted metabolomics data  (2025)  
    • Nature Communications
     Zhao, Haoqi Nina; Kvitne, Kine Eide; Brungs, Corinna; Mohan, Siddharth; Charron-Lamoureux, Vincent; Bittremieux, Wout; Tang, Runbang; Schmid, Robin; Lamichhane, Santosh; Xing, Shipei; El Abiead, Yasin; Andalibi, Mohammadsobhan S.; Mannochio-Russo, Helena; Ambre, Madison; Avalon, Nicole E.; Bryant, MacKenzie; Burnett, Lindsey A.; Caraballo-Rodríguez, Andrés Mauricio; Maya, Martin Casas; Chin, Loryn; Corominas, Lluís; Ellis, Ronald J.; Franklin, Donald; Girod, Sagan; Gomes, Paulo Wender, P.; Hansen, Lauren; Heaton, Robert K.; Iudicello, Jennifer E.; Jarmusch, Alan K.; Khatib, Lora; Letendre, Scott; Magyari, Sarolt; McDonald, Daniel; Mohanty, Ipsita; Cumsille, Andrés; Moore, David J.; Rajkumar, Prajit; Ross, Dylan H.; Sapre, Harshada; Shahneh, Mohammad Reza Zare; Gil-Solsona, Ruben; Thomas, Sydney P.; Tribelhorn, Caitlin; Tubb, Helena M.; Walker, Corinn; Wang, Crystal X.; Zemlin, Jasmine; Zuffa, Simone; Wishart, David S.; Gago-Ferrero, Pablo; Kaddurah-Daouk, Rima; Wang, Mingxun; Raffatellu, Manuela; Zengler, Karsten; Pluskal, Tomáš; Xu, Libin; Knight, Rob; Tsunoda, Shirley M.; Dorrestein, Pieter C.


  • Dynamics of gut metabolome and microbiota maturation during early life  (2025)  
    • iScience
     Aatsinki, Anna-Katariina; Lamichhane, Santosh; Isokääntä, Heidi; Sen, Partho; Kråkström, Matilda; Amaral Alves, Marina; Keskitalo, Anniina; Munukka, Eveliina; Karlsson, Hasse; Perasto, Laura; Lukkarinen, Minna; Oresic, Matej; Kailanto, Henna-Maria; Karlsson, Linnea; Lahti, Leo; Dickens, Alex M.


  • Intra- and inter-individual variation of the human lipidome  (2025)  
    • Trends in Analytical Chemistry
     Anh, Nguyen Hoang; Beyene, Habtamu B.; Mocciaro, Gabriele; Hahnefeld, Lisa; Lamichhane, Santosh; Fabritius, Mikael; Avela, Henri; Wang, Yuqin; Dickens, Alex M.; Gurke, Robert; Yang, Baoru; Griffiths, William J.; Hyötyläinen, Tuulia; Meikle, Peter J.; Orešič, Matej


  • The microbiome diversifies long-to short-chain fatty acid-derived N-acyl lipids  (2025)  
    • Cell
     Mannochio-Russo, Helena; Charron-Lamoureux, Vincent; van Faassen, Martijn; Lamichhane, Santosh; Nunes, Wilhan D. Goncalves; Deleray, Victoria; Ayala, Adriana, V; Tanaka, Yuichiro; Patan, Abubaker; Vittali, Kyle; Rajkumar, Prajit; El Abiead, Yasin; Zhao, Haoqi Nina; Gomes, Paulo Wender Portal; Mohanty, Ipsita; Lee, Carlynda; Sund, Aidan; Sharma, Meera; Liu, Yuanhao; Pattynama, David; Walker, Gregory T.; Norton, Grant J.; Khatib, Lora; Andalibi, Mohammadsobhan S.; Wang, Crystal X.; Ellis, Ronald J.; Moore, David J.; Iudicello, Jennifer E.; Franklin Jr, Donald; Letendre, Scott; Chin, Loryn; Walker, Corinn; Renwick, Simone; Zemlin, Jasmine; Meehan, Michael J.; Song, Xinyang; Kasper, Dennis; Burcham, Zachary; Kim, Jane J.; Kadakia, Sejal; Raffatellu, Manuela; Bode, Lars; Chu, Hiutung; Zengler, Karsten; Wang, Mingxun; Siegel, Dionicio; Knight, Rob; Dorrestein, Pieter C.


  • Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization  (2024)  
    • Analytical Chemistry
     Isokääntä, Heidi; Pinto da Silva, Lucas; Karu, Naama; Kallonen, Teemu; Aatsinki, Anna-Katariina; Hankemeier, Thomas; Schimmel, Leyla; Diaz, Edgar; Hyötyläinen, Tuulia; Dorrestein, Pieter C.; Knight, Rob; Orešič, Matej; Kaddurah-Daouk, Rima; Dickens, Alex M.; Lamichhane, Santosh



Last updated on 14/11/2025 01:17:21 AM