PhD, Docent Manu Tamminen - UTU Research Portal

Manu Tamminen
PhD, Docent

- University Lecturer,
Physiology and Genetics (Department of Biology)
- Docent,
Department of Biology (Faculty of Science)

manu.tamminen@utu.fi

Office: 312

ORCID identifier: https://orcid.org/0000-0001-5891-7653

Research pages

Researchgate

Google Scholar

Areas of expertise

Molecular biology, Bioinformatics, Microbial Genetics, Microbial Ecology

Biography

MSc, University of Turku, 2002
PhD, University of Helsinki, 2011
Post-doc, MIT, 2011-2013
Post-doc, ETH Zürich, 2014-2017
Adjunct professor, University of Turku, 2017
Senior lecturer, University of Turku, 2017-

Research

Single cell genomics of bacteria and small eukaryotes
Horizontal transfer of antibiotic resistance genes
Quantitative applications of NGS

Teaching

Publications

2 of 4

Molecular Characterisation of Faecal Bacterial Assemblages Among Four Species of Syntopic Odonates (2024)
- Microbial Ecology
Morrill, Andre; Forbes, Mark; Vesterinen, Eero; Tamminen, Manu; Sääksjärvi, Ilari; Kaunisto, Kari
(A1 Refereed original research article in a scientific journal)
The role of early life factors and green living environment in the development of gut microbiota in infancy : Population-based cohort study (2024)
- Environment International
Ovaska, Minka; Tamminen, Manu; Lahdenperä, Mirkka; Vahtera, Jussi; Rautava, Samuli; Gonzales-Inca, Carlos; Heiskanen, Marja A.; Lagström, Hanna
(A1 Refereed original research article in a scientific journal)
Glyphosate and a glyphosate-based herbicide affect bumblebee gut microbiota (2023)
- FEMS Microbiology Ecology
Helander Marjo, Jeevannavar Aditya, Kaakinen Kimmo, Mathew Suni A., Saikkonen Kari, Fuchs Benjamin, Puigbò Pere, Loukola Olli J., Tamminen Manu
(A1 Refereed original research article in a scientific journal)
Portable BLAST-like algorithm library and its implementations for command line, Python, and R (2023)
- PLoS ONE
Schmid Steven, Jeevannavar Aditya, Julian Timothy R., Tamminen Manu
(A1 Refereed original research article in a scientific journal)
Influence of Microplastics on Microbial Structure, Function, and Mechanical Properties of Stream Periphyton (2022)
- Frontiers in Environmental Science
Merbt Stephanie N, Kroll Alexandra, Tamminen Manu, Rühs Patrick A, Wagner Bettina, Sgier Linn, Sembalova Olga, Abel Bernd, Tlili Ahmed, Schirmer Kristin, Behra Renata
(A1 Refereed original research article in a scientific journal)
Prider: multiplexed primer design using linearly scaling approximation of set coverage (2022)
- BMC Bioinformatics
Smolander Niina, Julian Timothy R, Tamminen Manu
(A1 Refereed original research article in a scientific journal)
Quantitative online survey of self-perceived knowledge and knowledge gaps of medicines research and development among Finnish general public (2022)
- BMJ Open
Tran Minh Mirjami, Tamminen Manu, Tamminen-Sirkiä Jenni, Majumder Mamun Majumder, Tabassum Rubina, Lahti Tuuli
(A1 Refereed original research article in a scientific journal)
Wastewater constituents impact biofilm microbial community in receiving streams (2022)
- Science of the Total Environment
Tamminen Manu, Spaak Jenny, Tlili Ahmed, Eggen Rik, Stamm Christian, Räsänen Katja
(A1 Refereed original research article in a scientific journal)
Digital multiplex ligation assay for highly multiplexed screening of beta-lactamase-encoding genes in bacterial isolates (2020)
- Communications Biology
Tamminen M, Spaak J, Caduff L, Schiff H, Lang R, Schmid S, Montealegre MC, Julian TR
(A1 Refereed original research article in a scientific journal)
Perinnöllinen sairastumisalttius kiinnostaa kansalaisia (2020)
- Duodecim
Mirjami Tran Minh, Manu Tamminen, Jenni Tamminen-Sirkiä, Muntasir Mamun Majumder, Rubina Tabassum, Minna Anttonen, Tuuli Lahti
(A1 Refereed original research article in a scientific journal)