Manu Tamminen
PhD, Docent
manu.tamminen@utu.fi Office: 312 ORCID identifier: https://orcid.org/0000-0001-5891-7653 |
Areas of expertise
Molecular biology, Bioinformatics, Microbial Genetics, Microbial Ecology
Molecular biology, Bioinformatics, Microbial Genetics, Microbial Ecology
Biography
- MSc, University of Turku, 2002
- PhD, University of Helsinki, 2011
- Post-doc, MIT, 2011-2013
- Post-doc, ETH Zürich, 2014-2017
- Adjunct professor, University of Turku, 2017
- Senior lecturer, University of Turku, 2017-
Research
- Single cell genomics of bacteria and small eukaryotes
- Horizontal transfer of antibiotic resistance genes
- Quantitative applications of NGS
Teaching
Publications
- Bridge Capture permits cost-efficient, rapid and sensitive molecular precision diagnostics (2026)
- Journal of Molecular DiagnosticsbioRxiv
(A1 Refereed original research article in a scientific journal) - The role of human milk oligosaccharides in shaping and restoring infant gut microbiota: Population-based cohort study (2026)
- American Journal of Clinical Nutrition
(A1 Refereed original research article in a scientific journal) - Cellular heterogeneity in metabolism and associated microbiome of a non-model phytoflagellate (2025)
- ISME Journal
(A1 Refereed original research article in a scientific journal) - (2025)
- Scientific ReportsFrontiers in microbiology
(A1 Refereed original research article in a scientific journal) - Glyphosate and phosphate treatments in soil differentially affect crop microbiomes depending on species, tissue and growth stage (2025)
- Scientific Reports
(A1 Refereed original research article in a scientific journal) - High-Throughput Multiplex Detection of Antibiotic-Resistant Genes and Virulence Factors in Escherichia coli Using Digital Multiplex Ligation Assay (2025)
- Journal of Molecular DiagnosticsPhytobiomes journal
(A1 Refereed original research article in a scientific journal) - Polyacrylamide bead split-pool method for microbial community analysis (2025)
(Other publication) - Complete genome sequences of 30 bacterial species from a synthetic community (2024)
- Microbiology resource announcements
(A1 Refereed original research article in a scientific journal) - Foundation species stabilize an alternative eutrophic state in nutrient disturbed ponds via selection on microbial community (2024)
(A1 Refereed original research article in a scientific journal) - Glyphosate residues in soil and phosphate fertilizer affect foliar endophytic microbial community composition and phytohormone levels in potato (2024)
(A1 Refereed original research article in a scientific journal)



