Ilkka Paatero
 Ph.D.


ilanpa@utu.fi

+358 29 450 3789

Tykistökatu 6

Turku


ORCID identifierhttps://orcid.org/0000-0001-5926-2396





Areas of expertise
cancer; cardiovascular biology; toxicology; microscopy; zebrafish models; model organisms;

Research

My research covers broad range of topics in biomedicine. Current work is dealing mainly with cancer and cardiovascular biology.

My expertise is in application of model organisms, especially zebrafish (Danio rerio),
in biomedical research. These models can help to understand and solve
biomedical problems efficiently and ethically. Especially, when combined
with high-resolution intravital microscopy, these models can give deep
insights into developmental and disease processes in vivo. By using fish
eggs and embryos, it is also possible to reduce the number of more
complex and developed organisms used in research. These models, however, require certain set of skills and knowledge which is not part of the training of most medical and biomedical scientist. To facilite them to utilize the power of zebrafish models to advance their research, I have established a Zebrafish Core under Turku Centre for Biotechnology (University of Turku and Åbo Akademi University).



Publications
  
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  • Database of recurrent mutations, an unbiased web resource to browse recurrent mutations in cancers  (2026)  
    • iScience
     Chakroborty, Deepankar; Vaparanta, Katri; Ghimire, Bishwa; Paatero, Ilkka; Kurppa, Kari J.; Elenius, Klaus
    (
    A1 Refereed original research article in a scientific journal)


  • High-resolution live imaging of tardigrade response to anoxiaLIMA1-alpha staining predicts curative intent surgery response in HPV negative head and neck cancer  (2025)  
    • MicronEmbo molecular medicine
     Haapanen-Saaristo, Anna-Mari; Calhim, Sara; Paatero, Ilkka
    (
    A1 Refereed original research article in a scientific journal)


  •   (2025)  
       Qiao, Xi; Routila, Johannes; Tienhaara, Mari; Irjala, Heikki; Santhi, Priyadharshini Parimelazhagan; Huusko, Teemu; Nissi, Linda; Paatero, Ilkka; Lehtinen, Noora; Rantala, Juha; Viljanen, Toni; Leivo, Ilmo; Koivunen, Petri; Jouppila-Matto, Anna; Taulu, Rami; Back, Leif; Wilkman, Tommy; Haapio, Eeva; Kinnunen, Ilpo; Kurppa, Kari; Westermarck, Jukka; Ventelä, Sami
      (
      A1 Refereed original research article in a scientific journal)


    • Phosphoproteomic analysis reveals the diversity of signaling behind ErbB‐inhibitor‐induced phenotypes  (2025)  
      • FEBS Journal
       Vaparanta, Katri; Song, Zejia; Farahani, Iman; Jokilammi, Anne; Merilahti, Johannes; Örling, Johanna; Virtanen, Noora; Haapaniemi, Pekka; Sahlgren, Cecilia; Elenius, Klaus; Paatero, Ilkka
      (
      A1 Refereed original research article in a scientific journal)


    •   (2025)  
      • HGG advances
       Ampuja, Minna; Ericsson, Sabina; Paatero, Ilkka; Chowdhury, Iftekhar; Villman, Jenna; Broberg, Martin; Ramste, Amanda; Balboa, Diego; Ojala, Tiina; Chong, Jessica X.; Bamshad, Michael J.; Priest, James R.; Varjosalo, Markku; Kivelä, Riikka; Helle, Emmi
      (
      A1 Refereed original research article in a scientific journal)


    •   (2024)  
      • Embo molecular medicine
       Momeny, Majid; Tienhaara, Mari; Sharma, Mukund; Chakroborty, Deepankar; Varjus, Roosa; Takala, Iina; Merisaari, Joni; Padzik, Artur; Vogt, Andreas; Paatero, Ilkka; Elenius, Klaus; Laajala, Teemu D; Kurppa, Kari J; Westermarck, Jukka
      (
      A1 Refereed original research article in a scientific journal)


    •   (2024)  
      • Biomedicine and PharmacotherapyBiochemical and Biophysical Research Communications
       Huttunen, Roope; Haapanen-Saaristo, Anna-Mari; Hjelt Anja; Jokilammi, Anne; Paatero, Ilkka; Järveläinen, Hannu
      (
      A1 Refereed original research article in a scientific journal)


    •   (2024)  
      • Biology Open
       Niemeläinen, Miika; Haapanen-Saaristo, Anna-Mari; Koskinen, Leena M.; Gullmets, Josef; Peuhu, Emilia; Meinander, Annika; Calhim, Sara; Paatero, Ilkka
      (
      A1 Refereed original research article in a scientific journal)


    • Heat stress sensitizes zebrafish embryos to neurological and cardiac toxicity  (2024)  
         Haapanen-Saaristo, Anna-Mari; Virtanen, Noora; Tcarenkova, Elena; Vaparanta, Katri; Ampuja, Minna; Vehniainen, Eeva-Riikka; Paatero, Ilkka
        (
        A1 Refereed original research article in a scientific journal)


      •   (2024)  
        • Journal of Experimental and Clinical Cancer ResearchNucleic Acids Research
         Schneegans, Svenja; Löptien, Jana; Mojzisch, Angelika; Loreth, Desirée; Kretz, Oliver; Raschdorf, Christoph; Hanssen, Annkathrin; Gocke, Antonia; Siebels, Bente; Gunasekaran, Karthikeyan; Ding, Yi; Oliveira-Ferrer, Leticia; Brylka, Laura; Schinke, Thorsten; Schlüter, Hartmut; Paatero, Ilkka; Voß, Hannah; Werner, Stefan; Pantel, Klaus; Wikman, Harriet
        (
        A1 Refereed original research article in a scientific journal)


      • Jnk1 and downstream signalling hubs regulate anxiety-like behaviours in a zebrafish larvae phenotypic screen  (2024)  
        • Scientific Reports
         Hong, Ye; Sourander, Christel; Hackl, Benjamin; Patton, Jedidiah S.; John, Jismi; Paatero, Ilkka; Coffey, Eleanor
        (
        A1 Refereed original research article in a scientific journal)


      • SIX2 promotes cell plasticity via Wnt/β-catenin signalling in androgen receptor independent prostate cancer  (2024)  
           Leppänen, Noora; Kaljunen, Heidi; Takala, Eerika; Kaarijärvi, Roosa; Mäkinen, Petri I.; Ylä-Herttuala, Seppo; Paatero, Ilkka; Paakinaho, Ville; Ketola, Kirsi
          (
          A1 Refereed original research article in a scientific journal)


        • TLNRD1 is a CCM complex component and regulates endothelial barrier integrity  (2024)  
          • Journal of Cell Biology
           Ball, Neil J.; Ghimire, Sujan; Follain, Gautier; Pajari, Ada O.; Wurzinger, Diana; Vaitkevičiūtė, Monika; Cowell, Alana R.; Berki, Bence; Ivaska, Johanna; Paatero, Ilkka; Goult, Benjamin T.; Jacquemet, Guillaume
          (
          A1 Refereed original research article in a scientific journal)


        • Effect of caldesmon mutations in the development of zebrafish embryos  (2023)  
          • Biochemical and Biophysical Research Communications
           Virtanen Verneri, Paunu Kreetta, Niva Saana, Sundvall Maria, Paatero Ilkka
          (
          A1 Refereed original research article in a scientific journal)


        • Glucocorticoid receptor-induced non-muscle caldesmon regulates metastasis in castration-resistant prostate cancer  (2023)  
          • OncogenesisBiology Open
           Virtanen Verneri, Paunu Kreetta, Kukkula Antti, Niva Saana, Junila Ylva, Toriseva Mervi, Jokilehto Terhi, Mäkelä Sari, Huhtaniemi Riikka, Poutanen Matti, Paatero Ilkka, Sundvall Maria
          (
          A1 Refereed original research article in a scientific journal)


        • Impaired fin regeneration and angiogenesis in aged zebrafish and turquoise killifish  (2023)  
             Örling Johanna, Kosonen Katri, Villman Jenna, Reichard Martin, Paatero Ilkka
            (
            A1 Refereed original research article in a scientific journal)


          • Modeling of Zebrafish Housing Temperatures During Power Outage and Instrument Failure  (2023)  
            • Zebrafish
             Paatero Ilkka
            (
            A1 Refereed original research article in a scientific journal)


          •   (2023)  
            • Molecular OncologyEMBO Reports
             Aakula Anna, Isomursu Aleksi, Rupp Christian, Erickson Andrew, Gupta Nikhil, Kauko Otto, Shah Pragya, Padzik Artur, Pokharel Yuba Raj, Kaur Amanpreet, Li Song-Ping, Trotman Lloyd, Taimen Pekka, Rannikko Antti, Lammerding Jan, Paatero Ilkka, Mirtti Tuomas, Ivaska Johanna, Westermarck Jukka
            (
            A1 Refereed original research article in a scientific journal)


          • STAT5b is a key effector of NRG-1/ERBB4-mediated myocardial growth  (2023)  
               Vaparanta Katri, Jokilammi Anne, Paatero Ilkka, Merilahti Johannes A, Heliste Juho, Hemanthakumar Karthik Amudhala, Kivelä Riikka, Alitalo Kari, Taimen Pekka, Elenius Klaus
              (
              A1 Refereed original research article in a scientific journal)


            • Distinctive effects of SGLT2 inhibitors on angiogenesis in zebrafish embryos  (2022)  
              • Biomedicine and Pharmacotherapy
               Huttunen Roope, Sainio Annele, Hjelt Anja, Haapanen-Saaristo Anna-Mari, Määttä Jorma, Rummukainen Petri, Paatero Ilkka, Järveläinen Hannu
              (
              A1 Refereed original research article in a scientific journal)



            Last updated on 15/12/2025 01:32:04 PM