A1 Refereed original research article in a scientific journal
Community state shifts driven by total carbon availability over resource complexity in a synthetic microbial community; 
Authors: Bischofberger, Anna M; Cairns, Johannes; Aapalampi, Inga-Katariina; Pausio, Sanna; Lindqvist, Meri; Mustonen, Ville; Hiltunen, Teppo
Publisher: Oxford University Press (OUP)
Publication year: 2026
Journal: ISME Communications
Article number: ycag149
Volume: 6
Issue: 1
eISSN: 2730-6151
DOI: https://doi.org/10.1093/ismeco/ycag149
Publication's open availability at the time of reporting: Open Access
Publication channel's open availability : Open Access publication channel
Web address : https://doi.org/10.1093/ismeco/ycag149
Self-archived copy’s web address: https://research.utu.fi/converis/portal/detail/Publication/527008838
Self-archived copy's licence: CC BY
Self-archived copy's version: Publisher`s PDF
Even though complex microbial communities are ubiquitous and provide essential services for natural and human-associated ecosystems, our knowledge about their assembly and dynamics is incomplete. There is an ongoing debate about whether the behavior of complex communities can be predicted from the outcome of pairwise competition of species, and whether communities reach alternative stable states depending on the level and complexity of resources provided for growth. To estimate the effect of two resource gradients, total carbon availability and resource complexity, on the compositional dynamics of a microbial community, we conducted a 16-day serial passage experiment, transferring a 16-species synthetic community in 96 different resource environments. We observed that although both resource dimensions influenced community composition, total carbon exerted a considerably larger effect. Additionally, we saw strong, discrete community state shifts along the total carbon gradient, a feature not observed for the resource complexity gradient. Using monoculture assays, we identified lag phase duration as the dominant predictor of competitive success at carbon extremes, with maximum growth rate increasing in importance as lag times converged. Total carbon availability thus structured community state transitions and regulated which growth trait governed competitive sorting. These results suggest the importance of total carbon level over resource complexity and identifying dominant species for the quest to successfully manage, maintain, and manipulate complex microbial communities.
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Funding information in the publication:
A.M.B. was funded by a Postdoc.Mobility Fellowship from the Swiss National Science Foundation (grant number P500PB_214345). This work was supported by the SciLifeLab and Wallenberg Data Driven Life Science Program (grant number KAW 2024.0159, provided to J.C.). I.K.A. was supported by a research grant from the Jenny and Antti Wihuri Foundation (grant number 00250005) and the Finnish Cultural Foundation (grant number 85241664). T.H. was funded by the Research Council of Finland (grant numbers 346126 and 364232).