Toward a sustainable protection group approach for solid-phase oligonucleotide synthesis employing 5′-O-(2-methoxyisopropyl) protection;




Saari, Verneri; Ora, Mikko; Gimenez Molina, Alejandro; Horvath, Andras; Sanghvi, Yogesh S.; Virta, Pasi

PublisherRoyal Society of Chemistry (RSC)

2026

 Organic and Biomolecular Chemistry

24

29

6082

6091

1477-0520

1477-0539

DOIhttps://doi.org/10.1039/d6ob00858e

https://doi.org/10.1039/d6ob00858e

https://research.utu.fi/converis/portal/detail/Publication/526996114



5′-O-(2-Methoxyisopropyl) (MIP)-protected nucleoside-3′-O-phosphoramidites were synthesized and evaluated as novel building blocks for automated solid-phase oligonucleotide synthesis (SPOS). Activators and additives were screened to establish the optimal conditions for the coupling of the 5′-O-MIP building blocks. Approximately half the amount of the deblocking reagent can be used to remove 5′-O-MIP compared to 5′-O-4,4′-dimethoxytrityl (DMT) with twice the rate for its deprotection. The faster 5′-O-deprotection rate reduced overall acid consumption, while the small-molecule benign byproducts (acetone and methanol) generated via MIP deprotection permit a lower PMI during SPOS. This work potentially leverages the improved design of sustainable strategies for the manufacturing of therapeutic oligonucleotides.


Financial support from the Doctoral Programme in Exact Sciences (EXACTUS) is acknowledged.


Last updated on 10/08/2026 02:05:40 PM