A1 Refereed original research article in a scientific journal

Evaluation of temporal preservation in synthetic longitudinal patient data;




AuthorsPerkonoja, Katariina; Movahedi, Parisa; Airola, Antti; Auranen, Kari; Virta, Joni

PublisherElsevier BV

Publication year2026

Journal: Journal of Biomedical Informatics

Article number105074

Volume180

ISSN1532-0464

eISSN1532-0480

DOIhttps://doi.org/10.1016/j.jbi.2026.105074

Publication's open availability at the time of reportingOpen Access

Publication channel's open availability Partially Open Access publication channel

Web address https://doi.org/10.1016/j.jbi.2026.105074

Self-archived copy’s web addresshttps://research.utu.fi/converis/portal/detail/Publication/526967326

Self-archived copy's licenceCC BY

Self-archived copy's versionPublisher`s PDF


Abstract
Objective:

This study introduces a set of metrics for evaluating temporal preservation in synthetic longitudinal patient data, defined as artificially generated data that mimic real patients’ repeated measurements over time.

Methods:

The proposed metrics assess how synthetic data reproduce key temporal characteristics, categorized into marginal, covariance, individual-level and measurement structures.

Results:

Strong marginal-level resemblance may be observed even when the covariance structures and individual trajectories are substantially different. Temporal preservation is influenced by factors such as original data quality, measurement frequency, and preprocessing strategies, including binning, variable encoding and precision. Variables with sparse or highly irregular measurement times provide limited information for learning temporal dependencies, yielding reduced resemblance between the synthetic and original data.

Conclusion:

No single metric adequately captures temporal preservation; instead, a multidimensional evaluation across all characteristics provides a more comprehensive assessment of synthetic data quality. Overall, the proposed metrics elucidate how and why temporal structures are preserved or degraded, enabling more reliable evaluation and improvement of generative models and supporting the creation of temporally realistic synthetic longitudinal patient data.


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Funding information in the publication
This work has received funding from European Union’s Horizon Europe research and innovation programme (grant number 101095384). Views and opinions expressed are those of the authors only and do not necessarily reflect those of the European Union or the European Health and Digital Executive Agency (HADEA). Neither the European Union nor the granting authority can be held responsible for them. The work of KP, JV and AA was supported by the Research Council of Finland (grants 347501, 353769, 358868, 368494). KP also received support from the Finnish Cultural Foundation (grant 00260122). The funding agencies had no involvement in the study.


Last updated on 07/08/2026 09:16:13 AM