A1 Refereed original research article in a scientific journal

Immersing reaction system specifications in evaluating environments;




AuthorsBottoni, Paolo; Labella, Anna; Mitrana, Victor; Petre, Ion

PublisherSpringer Science and Business Media LLC

Publication year2026

Journal: Natural Computing

Article number20

Volume25

Issue2

ISSN1567-7818

eISSN1572-9796

DOIhttps://doi.org/10.1007/s11047-026-10074-9

Publication's open availability at the time of reportingOpen Access

Publication channel's open availability Partially Open Access publication channel

Web address https://doi.org/10.1007/s11047-026-10074-9

Self-archived copy’s web addresshttps://research.utu.fi/converis/portal/detail/Publication/526914018

Self-archived copy's licenceCC BY

Self-archived copy's versionPublisher`s PDF


Abstract

We propose an extension to the framework of reaction systems such that the environment not only plays the role of contributing entities to the successor state, but also influences the actual generation of products. In particular, we consider that an environment can assign valences to entities, be they used as reactants or inhibitors in a reaction, as well as select the entities which can appear in the successor state as product of a reaction. This provides a framework for immersing reaction system specifications into different contexts. We also derive a notion of polarised reaction systems, where entities can appear only as reactants or inhibitors in any given reaction. We compare the expressive power of the models, also showing some equivalences between them, and test them on three case studies derived from physiology, ecology, and chemistry.


Downloadable publication

This is an electronic reprint of the original article.
This reprint may differ from the original in pagination and typographic detail. Please cite the original version.




Funding information in the publication
Open access funding provided by Università degli Studi di Roma La Sapienza within the CRUI-CARE Agreement.


Last updated on 04/08/2026 02:23:47 PM