A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä
Dynamic landscape of transcription initiation by yeast RNA polymerase I
Tekijät: Parilova, Olena; Bartos, Piia; Malinen, Anssi M.
Julkaisuvuosi: 2026
Lehti: Nucleic Acids Research
Artikkelin numero: gkag153
Vuosikerta: 54
Numero: 5
ISSN: 0305-1048
eISSN: 1362-4962
DOI: https://doi.org/10.1093/nar/gkag153
Julkaisun avoimuus kirjaamishetkellä: Avoimesti saatavilla
Julkaisukanavan avoimuus : Kokonaan avoin julkaisukanava
Verkko-osoite: https://doi.org/10.1093/nar/gkag153
Rinnakkaistallenteen osoite: https://research.utu.fi/converis/portal/detail/Publication/515647872
Rinnakkaistallenteen lisenssi: CC BY
Rinnakkaistallennetun julkaisun versio: Kustantajan versio
RNA polymerase I (Pol I) synthesizes precursor ribosomal RNA, a key step in ribosome biogenesis. Elevated Pol I activity supports rapid cell growth—a hallmark of cancer—making Pol I a therapeutic target. The initial step in synthesis involves assembly of the Pol I transcription initiation complex on the gene promoter; however, its quantitative and dynamic parameters remain poorly defined. Here, we integrate biochemical, biophysical, and molecular dynamics approaches to dissect promoter and transcription start site (TSS) recognition by the Saccharomyces cerevisiae Pol I machinery. We show that core factor (CF) identifies the promoter through a two–step mechanism: a rapid encounter is followed by a slower conformational transition that establishes stabilizing interactions. In contrast, CF binds nonpromoter DNA in a single step without such transitions, forming nonspecific complexes that dissociate quickly. Correct promoter binding allows CF to recruit and position Pol I near the TSS, inducing DNA bending, helix distortion, and melting as the preinitiation complex converts into an active state. These functional and dynamic parameters contribute to a quantitative framework for elucidating the molecular mechanisms of Pol I regulation and inhibition.
Ladattava julkaisu This is an electronic reprint of the original article. |
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The work was supported by Research Council of Finland (307775, 314100, and 335377 to A.M.M.), Sigrid Juséliuksen säätiö (to A.M.M.), Turun Yliopistosäätiö (to A.M.M.), University of Turku Graduate School (UTUGS; to O.P.), Suomen Kulttuurirahasto (to O.P.), and Emil Aaltosen Säätiö (to P.B). Funding to pay the Open Access publication charges for this article was provided by Research grant (from Sigrid Juseliuksen säätiö).