Multi-omics analysis reveals the attenuation of the interferon pathway as a driver of chemo-refractory ovarian cancer




Afenteva, Daria; Yu, Rong; Rajavuori, Anna; Salvadores, Marina; Launonen, Inga-Maria; Lavikka, Kari; Zhang, Kaiyang; Pirttikoski, Anna; Marchi, Giovanni; Jamalzadeh, Sanaz; Isoviita, Veli-Matti; Li, Yilin; Micoli, Giulia; Erkan, Erdogan Pekcan; Falco, Matias M.; Ungureanu, Daniela; Lahtinen, Alexandra; Oikkonen, Jaana; Hietanen, Sakari; Vähärautio, Anna; Sur, Inderpreet; Virtanen, Anni; Färkkilä, Anniina; Hynninen, Johanna; Muranen, Taru A.; Taipale, Jussi; Hautaniemi, Sampsa

PublisherCell Press

2025

Cell Reports Medicine

Cell Reports Medicine

102316

6

9

2666-3791

DOIhttps://doi.org/10.1016/j.xcrm.2025.102316

https://doi.org/10.1016/j.xcrm.2025.102316

https://research.utu.fi/converis/portal/detail/Publication/499884655



Ovarian high-grade serous carcinoma (HGSC) is one of the deadliest gynecological malignancies, with 10%–15% of patients exhibiting primary resistance to first-line chemotherapy. To characterize the molecular drivers of chemo-refractoriness, we perform multi-omics profiling of treatment-naive biopsies from patients with refractory HGSC enrolled in the DECIDER observational trial. We demonstrate that chemo-refractory HGSC is characterized by diminished interferon type I (IFN-I) and enhanced hypoxia pathway activity, and baseline IFN-I activity in chemo-naive cancer is an independent prognostic factor. Single-cell RNA sequencing and spatial protein profiling analyses corroborate the importance of elevated IFN-I activity in response to chemotherapy. Importantly, in vitro experiments demonstrate that high levels of IFN-I signaling increase cell chemosensitivity to platinum in a cell-autonomous manner. Together, these findings indicate that the IFN-I pathway activity in HGSC cancer cells predicts response to first-line chemotherapy in HGSC, proposing the stimulation of the IFN-I response as a therapeutic strategy. The study is registered at ClinicalTrials.gov (NCT04846933).


This project received funding from the European Union’s Horizon 2020 Research and Innovation Program under grant agreement 965193 (DECIDER), the Research Council of Finland, the Sigrid Jusélius Foundation, the Cancer Foundation Finland, Cancerfonden (Sweden), and the Swedish Research Council. This study was co-funded by the European Union (ERC, SPACE 101076096).


Last updated on 2025-07-10 at 08:38