Variation and prognostic potential of the gut antibiotic resistome in the FINRISK 2002 cohort




Pärnänen, Katariina; Ruuskanen, Matti O.; Sommeria-Klein, Guilhem; Laitinen, Ville; Kantanen, Pyry; Méric, Guillaume; Gazolla Volpiano, Camila; Inouye, Michael; Knight, Rob; Salomaa, Veikko; Havulinna, Aki S.; Niiranen, Teemu; Lahti, Leo

PublisherNATURE PORTFOLIO

BERLIN

2025

Nature Communications

NATURE COMMUNICATIONS

NAT COMMUN

5963

16

13

2041-1723

DOIhttps://doi.org/10.1038/s41467-025-61137-x

https://www.nature.com/articles/s41467-025-61137-x

https://research.utu.fi/converis/portal/detail/Publication/499246328



The spread of antibiotic-resistant bacteria has severely reduced the efficacy of antibiotics and now contributes to 1 million deaths annually. The gut microbiome is a major reservoir of antibiotic resistance in humans, yet the extent to which gut antibiotic resistance gene load varies within human populations and the drivers that contribute most to this variation remain unclear. Here, we demonstrate, in a representative cohort of 7095 Finnish adults, that socio-demographic factors, lifestyle, and gut microbial community composition shape resistance gene selection and transmission processes. Resistance was linked not only to prior use of antibiotics, as anticipated, but also to frequent consumption of fresh vegetables and poultry, two food groups previously reported to contain antibiotic-resistant bacteria. Interestingly, resistance was not linked to the consumption of high-fat and high-sugar foods, but was consistently higher in females and urban high-income individuals, who currently have generally lower mortality rates. Nevertheless, during the 17-year follow-up, high resistance was associated with a 1.07-fold increase in mortality risk, comparable to elevated blood pressure, and with a heightened risk of sepsis. These findings highlight risks and socio-demographic dimensions of antibiotic resistance that are particularly relevant in the current context of global urbanization and middle-class growth.


Research Council of Finland grant 348439: K.P. Research Council of Finland grant 338818: M.O.R. Research Council of Finland grant 340314: G.S.K. Research Council of Finland grant 321351: T.N. Research Council of Finland grant 354447: T.N. Research Council of Finland grant 330887: V.L. and L.L. Alhopuro foundation grant 20220114: K.P. Alhopuro foundation grant 20210172: G.S.K. Australian National Health and Medical Research Council (NHMRC) grant GNT2013468: C.G.V. and G.M. Finnish Cultural Foundation grant 210944: M.O.R. Sigrid Jusélius Foundation: T.N.


Last updated on 2025-13-08 at 13:32