A1 Refereed original research article in a scientific journal
On the distribution of isometric log-ratio coordinates under extra-multinomial count data
Authors: Kartiosuo, Noora; Virta, Joni; Nevalainen, Jaakko; Raitakari, Olli; Auranen, Kari
Publisher: Springer Science and Business Media LLC
Publishing place: NEW YORK
Publication year: 2025
Journal: Statistical Papers
Journal name in source: Statistical Papers
Journal acronym: STAT PAP
Article number: 113
Volume: 66
Issue: 5
Number of pages: 30
ISSN: 0932-5026
eISSN: 1613-9798
DOI: https://doi.org/10.1007/s00362-025-01732-8
Web address : https://doi.org/10.1007/s00362-025-01732-8
Self-archived copy’s web address: https://research.utu.fi/converis/portal/detail/Publication/499223265
Compositional data can be mapped from the simplex to the Euclidean space through the isometric log-ratio (ilr) transformation. When the underlying counts follow a multinomial distribution, the distribution of the ensuing ilr coordinates has been shown to be asymptotically multivariate normal. We derive conditions under which the asymptotic normality of the ilr coordinates holds under a compound multinomial distribution inducing overdispersion in the counts. We derive a normal approximation and investigate its practical applicability under extra-multinomial variation using a simulation study under the Dirichlet-multinomial distribution. The approximation works well, except with a small total count or high amount of overdispersion. Our work is motivated by microbiome data, which exhibit extra-multinomial variation and are increasingly treated as compositions. We conclude that if empirical data analysis relies on the normality of ilr coordinates, it may be advisable to choose a taxonomic level with less sparsity so that the distribution of taxon-specific class probabilities remains unimodal.
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Funding information in the publication:
Open Access funding provided by University of Turku (including Turku University Central Hospital). Open Access funding provided by University of Turku (including Turku University Central Hospital). NK has been financially supported by Emil Aaltonen Foundation, Alfred Kordelin Foundation, Finnish Cultural Foundation and the MATTI programme in The University of Turku Graduate School (UTUGS). The work of JV was supported by Research Council of Finland, Grants 347501, 353769 and 368494.
