G5 Artikkeliväitöskirja

Structural studies of enzymes from thermophilic organisms and identification of their thermostability factors




TekijätImran, Mohsin

KustannuspaikkaTurku

Julkaisuvuosi2025

Sarjan nimiTurun yliopiston julkaisuja - Annales Universitatis Turkunesis AI

Numero sarjassa738

ISBN978-952-02-0183-8

eISBN78-952-02-0184-5

ISSN0082-7002

eISSN2343-3175

Verkko-osoitehttps://urn.fi/URN:ISBN:978-952-02-0184-5


Tiivistelmä

Thermophilic enzymes are characterized by their ability to resist temperature while  maintaining their catalytic efficiency. They are mostly found in organisms, such as  bacteria or fungi, that reside in natural habitats of high temperatures, usually between  50–80 °C. Thermophilic enzymes are of utmost importance for industrial and  research applications and understanding their properties is key for their further  improvement by genetic engineering approaches.

This study investigated four thermophilic enzymes, three from fungal sources  and one from a bacterial source. X-ray crystallography technique was employed to  extract the three-dimensional (3D) structural details of the enzymes. A brief  description of the investigated thermophilic enzymes is given below.  The crystal structure of a β-glucosidase from a thermophilic fungus  (Chaetomium thermophilum), referred here as CtBGL, was determined to a  resolution of 2.99 Å. CtBGL structure revealed the nucleophilic (Asp287) and  acid/base (Glu517) catalytic residues. The structure of CtBGL showed a three- domain architecture as in other β-glucosidases but with variations in loops and linker  regions. Glycosylation and charged residues were suggested as the potential  thermostability contributing factors in CtBGL. 

The crystal structure of an Auxiliary Activity 9 Lytic Polysaccharide Mono  Oxygenase produced by the thermophilic fungus Thermoascus aurantiacus, referred  to here as native TaAA9A (nTaAA9A), was determined to a resolution of 1.36 Å.  nTaAA9A was found to be active in producing C1- and C4-oxidized products from  cellulose and xylan. The nTaAA9A structure was compared with the recombinant  form of the enzyme expressed in Aspergillus oryzae (rTaAA9A). The compared  structures exhibited a root mean square deviation (RMSD) of 0.43 Å after structural  superposition, suggesting subtle changes. Differences were observed in surface  loops and glycosylation sites. nTaAA9A revealed higher degree of glycosylation  than rTaAA9A. In nTaAA9A, Asn138 residue was found glycosylated with at least  two NAG molecules. Glycosylation and electrostatic interactions were suggested as  possible thermostability contributing factors.

The crystal structure of a Cu,Zn superoxide dismutase from a thermophilic  fungus Chaetomium thermophilum (CtSOD) was determined to a resolution of 1.56  Å. CtSOD was crystallized with eight molecules (A-H) in the crystallographic  asymmetric unit, resulting in eight distinct interfaces. Zn2+ was present in all subunits, but Cu2+ in 4 subunits only (C, D, E, and F). The active-site pocket region, along with the copper- and zinc-binding sites, were found highly conserved. A higher  degree of oligomerization and an elevated contribution of polar residues in CtSOD  were suggested as thermostability contributing factors.

The crystal structure of a carbonic anhydrase from a thermophilic bacterium  Caloramator australicus (γ-CaCA) was determined to 1.11 Å resolution. This is the  highest resolution thus far for a γ-family carbonic anhydrase. The enzyme was  crystallized with 3 molecules in the asymmetric unit. The active site of each  molecule was found at the interface of two neighbouring molecules. The γ-CaCA  structure was found highly conserved, but differences were noticed in loop regions  compared to other CAs. Charged residues and hydrophobic clusters were suggested  as possible thermostability contributing factors in γ-CaCA.

Thermozymes hold a promising future for bio-economy and green chemistry.  The results presented here could offer new ideas to develop sustainable and  environment-friendly solutions for a better future.



Last updated on 2025-09-06 at 13:14