Practical considerations for data exploration in quantitative cell biology




Pylvänäinen, Joanna W.; Grobe, Hanna; Jacquemet, Guillaume

PublisherThe Company of Biologists

CAMBRIDGE

2025

Journal of Cell Science

Journal of Cell Science

J CELL SCI

jcs263801

138

7

10

0021-9533

1477-9137

DOIhttps://doi.org/10.1242/jcs.263801

https://doi.org/10.1242/jcs.263801

https://research.utu.fi/converis/portal/detail/Publication/491923115



Data exploration is an essential step in quantitative cell biology, bridging raw data and scientific insights. Unlike polished, published approach that reveals trends, identifies outliers and refines hypotheses. This Opinion offers simple, practical advice for building a structured data exploration workflow, drawing on the authors' personal experience in analyzing bioimage datasets. In addition, the increasing availability of generative artificial intelligence and large language models makes coding and improving data workflows easier than ever before. By embracing these practices, researchers can streamline their workflows, produce more reliable conclusions and foster a collaborative, transparent approach to data analysis in cell biology.


This work was supported by the Research Council of Finland (338537) , the Sigrid Juselius Foundation, the Cancer Society of Finland, the Solutions for Health strategic funding to abo Akademi University (to G.J.) and the InFLAMES Flagship Programme of the Academy of Finland (decision numbers: 337530, 337531, 357910, 35791) . Open Access funding provided by the Sigrid Juselius Foundation. Deposited in PMC for immediate release.


Last updated on 2025-18-08 at 17:00