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Enantiomers of the prion protein degrader SM875: Production and configurational assignment, in silico analysis and in vitro evaluation




TekijätInnocenti, Nicole; Tähtinen, Petri; Spagnolli, Giovanni; Perrucci, Cecilia; Bellini, Martina; Parolin, Eleonora; Bonaldo, Valerio; Biasini, Emiliano; Mancini, Ines

KustantajaACADEMIC PRESS INC ELSEVIER SCIENCE

KustannuspaikkaSAN DIEGO

Julkaisuvuosi2025

JournalBioorganic Chemistry

Tietokannassa oleva lehden nimiBIOORGANIC CHEMISTRY

Lehden akronyymiBIOORG CHEM

Artikkelin numero108489

Vuosikerta161

Sivujen määrä9

ISSN0045-2068

eISSN1090-2120

DOIhttps://doi.org/10.1016/j.bioorg.2025.108489

Verkko-osoitehttps://doi.org/10.1016/j.bioorg.2025.108489

Rinnakkaistallenteen osoitehttps://research.utu.fi/converis/portal/detail/Publication/491874845


Tiivistelmä
Prion diseases are rare and fatal neurodegenerative conditions affecting humans and animals caused by the misfolding of the cellular prion protein (PrP). Recently, the molecule 1-(4-bromophenyl)-1,4,5,7-tetrahydro-4-(4hydroxy-3)-6H-pyrazolo[3,4-b]pyridin-6-one, named SM875, was identified as a promising PrP degrader through a computational approach targeting folding intermediates. The racemic mixture of SM875 showed biological activity but also exhibited variable toxicity. In this study, we optimized the synthesis of racemic SM875 and achieved high-purity enantiomeric separation via chiral HPLC. The docking calculation data of each enantiomer with a simplified model of Chiralpak IA (R), used as the chiral stationary phase, were in line with their relative elution time. The electronic circular dichroic (ECD) spectra acquired for each isomer compared with the TD-DFT calculated spectrum for (R)-SM875 allowed the assignment of their absolute configuration. The biological evaluation revealed that the (R)-enantiomer solely reduces PrP levels, with associated toxicity, while the (S)- enantiomer is inactive. Molecular dynamics simulations corroborate the (R)-enantiomer's stronger interaction with PrP. These findings provide a foundation for therapeutic development targeting prion diseases.


Julkaisussa olevat rahoitustiedot
This work was partially supported by grants from Fondazione Telethon (GGP20043), the American CJD Foundation and the Italian Association for Prion Encephalopathies (Aienp) to E.B.


Last updated on 2025-02-06 at 15:44