A1 Refereed original research article in a scientific journal
Radiomics and machine learning of multisequence multiparametric prostate MRI: Towards improved non-invasive prostate cancer characterization
Authors: Jussi Toivonen, Ileana Montoya Perez, Parisa Movahedi, Harri Merisaari, Marko Pesola, Pekka Taimen, Peter J. Boström, Jonne Pohjankukka, Aida Kiviniemi, Tapio Pahikkala, Hannu J. Aronen, Ivan Jambor
Publisher: Public Library of Science
Publication year: 2019
Journal: PLoS ONE
Journal name in source: PLoS ONE
Volume: 14
Issue: 7
ISSN: 1932-6203
eISSN: 1932-6203
DOI: https://doi.org/10.1371/journal.pone.0217702
Self-archived copy’s web address: https://research.utu.fi/converis/portal/detail/Publication/42073491
Purpose
To
develop and validate a classifier system for prediction of prostate
cancer (PCa) Gleason score (GS) using radiomics and texture features of T2-weighted imaging (T2w), diffusion weighted imaging (DWI) acquired using high b values, and T2-mapping (T2).
Methods
T2w, DWI (12 b values, 0–2000 s/mm2), and T2
data sets of 62 patients with histologically confirmed PCa were
acquired at 3T using surface array coils. The DWI data sets were
post-processed using monoexponential and kurtosis models, while T2w
was standardized to a common scale. Local statistics and 8 different
radiomics/texture descriptors were utilized at different configurations
to extract a total of 7105 unique per-tumor features. Regularized
logistic regression with implicit feature selection and leave pair out
cross validation was used to discriminate tumors with 3+3 vs >3+3 GS.
Results
In
total, 100 PCa lesions were analysed, of those 20 and 80 had GS of 3+3
and >3+3, respectively. The best model performance was obtained by
selecting the top 1% features of T2w, ADCm and K with ROC AUC of 0.88 (95% CI of 0.82–0.95). Features from T2
mapping provided little added value. The most useful texture features
were based on the gray-level co-occurrence matrix, Gabor transform, and
Zernike moments.
Conclusion
Texture feature analysis of DWI, post-processed using monoexponential and kurtosis models, and T2w
demonstrated good classification performance for GS of PCa. In
multisequence setting, the optimal radiomics based texture extraction
methods and parameters differed between different image types.
Downloadable publication This is an electronic reprint of the original article. |