A1 Refereed original research article in a scientific journal

From feces to data: A metabarcoding method for analyzing consumed and available prey in a bird‐insect food web




AuthorsRytkönen S, Vesterinen EJ, Westerduin C, Leviäkangas T, Vatka E, Mutanen M, Välimäki P, Hukkanen M, Suokas M, Orell M

PublisherJohn Wiley & Sons Ltd.

Publication year2019

JournalEcology and Evolution

Volume9

Issue1

First page 631

Last page639

Number of pages9

ISSN2045-7758

eISSN2045-7758

DOIhttps://doi.org/10.1002/ece3.4787

Self-archived copy’s web addresshttps://research.utu.fi/converis/portal/detail/Publication/37447161


Abstract

Diets play a key role in understanding trophic interactions. Knowing the actual structure of food webs contributes greatly to our understanding of biodiversity and ecosystem functioning. The research of prey preferences of different predators requires knowledge not only of the prey consumed, but also of what is available. In this study, we applied DNA metabarcoding to analyze the diet of 4 bird species (willow tits Poecile montanus, Siberian tits Poecile cinctus, great tits Parus major and blue tits Cyanistes caeruleus) by using the feces of nestlings. The availability of their assumed prey (Lepidoptera) was determined from feces of larvae (frass) collected from the main foraging habitat, birch (Betula spp.) canopy. We identified 53 prey species from the nestling feces, of which 11 (21%) were also detected from the frass samples (eight lepidopterans). Approximately 80% of identified prey species in the nestling feces represented lepidopterans, which is in line with the earlier studies on the parids' diet. A subsequent laboratory experiment showed a threshold for fecal sample size and the barcoding success, suggesting that the smallest frass samples do not contain enough larval DNA to be detected by high‐throughput sequencing. To summarize, we apply metabarcoding for the first time in a combined approach to identify available prey (through frass) and consumed prey (via nestling feces), expanding the scope and precision for future dietary studies on insectivorous birds.


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