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Intra- and intermolecular interactions influence the reactivity of RNA oligonucleotides




TekijätLinjalahti H, Mikkola S

KustantajaWILEY-V C H VERLAG GMBH

Julkaisuvuosi2007

JournalChemistry and Biodiversity

Tietokannassa oleva lehden nimiCHEMISTRY & BIODIVERSITY

Lehden akronyymiCHEM BIODIVERS

Vuosikerta4

Numero12

Aloitussivu2938

Lopetussivu2947

Sivujen määrä10

ISSN1612-1872

DOIhttps://doi.org/10.1002/cbdv.200790243


Tiivistelmä

The transesterification of RNA oligonucleotides was studied over a wide pH range. The rate constants obtained indicate that, under neutral conditions, oligonucleotides with an adenosine moiety as the 5'-linked nucleoside can be up to 1000-fold more reactive than the reference oligonucleotide, a 13-mer oligo-U (1). Experiments with the modified oligonucleotide with N-6,N-6-dimethyladenosine (9) as the 5'-Iinked nucleoside moiety suggest that the exocyclic amino group is involved in the reaction, influencing the reactivity of the neighboring phosphodiester bond. In addition to such intramolecular interactions, weak intermolecular interactions most probably contribute to the reactivity.



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