A1 Refereed original research article in a scientific journal

Mimics of small ribozymes utilizing a supramolecular scaffold




AuthorsLonnberg TA, Helkearo M, Jancso A, Gajda T

PublisherROYAL SOC CHEMISTRY

Publication year2012

JournalDalton Transactions

Journal name in sourceDALTON TRANSACTIONS

Journal acronymDALTON T

Volume41

Issue11

First page 3328

Last page3338

Number of pages11

ISSN1477-9226

DOIhttps://doi.org/10.1039/c2dt10193a

Self-archived copy’s web addresshttps://research.utu.fi/converis/portal/detail/Publication/3195604


Abstract

For elucidating the mechanism of the general acid/base catalysis of the hydrolysis of RNA phosphodiester bonds, a number of cleaving agents having two cyclen moieties tethered to a 1,3,5-triazine core have been prepared and their ability to bind and cleave uridylyl-3', 5'-uridine (UpU) studied over a wide pH range. Around neutral pH, the cleaving agents form a highly stable ternary complex with UpU and Zn-II through coordination of the uracil N3 and the cyclen nitrogen atoms to the Zn-II ions. Under conditions where the triazine core exists in the deprotonated neutral form, hydrolysis of UpU, but not of adenylyl-3',5'-adenosine (ApA), is accelerated by approximately two orders of magnitude in the presence of the cleaving agents, suggesting general base rather than metal ion catalysis. The probable mechanism of the observed catalysis and implications to understanding the general acid/base-catalyzed phosphodiester hydrolysis by ribozymes are discussed.


Downloadable publication

This is an electronic reprint of the original article.
This reprint may differ from the original in pagination and typographic detail. Please cite the original version.





Last updated on 2024-26-11 at 19:40