A1 Refereed original research article in a scientific journal

Closed-tube human leukocyte antigen DQA1∗05 genotyping assay based on switchable lanthanide luminescence probes




AuthorsLehmusvuori A, Kiviniemi M, Ilonen J, Soukka T

PublisherElsevier

Publication year2014

JournalAnalytical Biochemistry

Journal name in sourceAnal Biochem

Journal acronymAnalytical biochemistry

Volume465

First page 6

Last page11

Number of pages6

ISSN0003-2697

DOIhttps://doi.org/10.1016/j.ab.2014.07.029

Web address http://www.ncbi.nlm.nih.gov/pubmed/25120130DO - 10.1016/j.ab.2014.07.029


Abstract

Genotyping in closed tube is commonly performed using polymerase chain reaction (PCR) amplification and allele-specific oligonucleotide probes using fluorescence resonance energy transfer (FRET). Here we introduce a homogeneous human leukocyte antigen (HLA)-DQA1 *05 end-point PCR assay based on switchable lanthanide luminescence probe technology and a simple dried blood sample preparation. The switchable probe technology is based on two non-luminescent oligonucleotide probes: one carrying a non-luminescent lanthanide chelate and the other carrying a light-absorbing antenna ligand. Hybridization of the probes in adjacent positions to the target DNA leads to the formation of a highly luminescent lanthanide chelate complex by self-assembly of the reporter molecules. Performance of the HLA-DQA1 *05 assay was evaluated by testing blood samples collected on sample collection cards and was prepared by lysing the punched samples (3-mm discs) using alkaline reaction conditions and high temperature. Testing of 147 blood samples yielded 100% correlation to the heterogeneous DELFIA technology-based reference assay. Genotyping requires carefully designed probe sequences able to discriminate matched and mismatched target sequences by hybridization. Furthermore, definite genotype discrimination was achieved because inherently non-luminescent switchable probes together with time-resolved measurement mode led to very low background signal level and, therefore, very high signal differences averaging 54-fold between DQA1 *05 and other alleles.




Last updated on 2024-26-11 at 12:06