A1 Refereed original research article in a scientific journal
BioImageXD: an open, general-purpose and high-throughput image-processing platform
Authors: Kankaanpaa P, Paavolainen L, Tiitta S, Karjalainen M, Paivarinne J, Nieminen J, Marjomaki V, Heino J, White DJ
Publisher: NATURE PUBLISHING GROUP
Publication year: 2012
Journal: Nature Methods
Journal name in source: NATURE METHODS
Journal acronym: NAT METHODS
Number in series: 7
Volume: 9
Issue: 7
First page : 683
Last page: 689
Number of pages: 7
ISSN: 1548-7091
DOI: https://doi.org/10.1038/NMETH.2047
Abstract
BioImageXD puts open-source computer science tools for three-dimensional visualization and analysis into the hands of all researchers, through a user-friendly graphical interface tuned to the needs of biologists. BioImageXD has no restrictive licenses or undisclosed algorithms and enables publication of precise, reproducible and modifiable workflows. It allows simple construction of processing pipelines and should enable biologists to perform challenging analyses of complex processes. We demonstrate its performance in a study of integrin clustering in response to selected inhibitors.
BioImageXD puts open-source computer science tools for three-dimensional visualization and analysis into the hands of all researchers, through a user-friendly graphical interface tuned to the needs of biologists. BioImageXD has no restrictive licenses or undisclosed algorithms and enables publication of precise, reproducible and modifiable workflows. It allows simple construction of processing pipelines and should enable biologists to perform challenging analyses of complex processes. We demonstrate its performance in a study of integrin clustering in response to selected inhibitors.
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