A1 Refereed original research article in a scientific journal

Segmentation of Dynamic Total-Body [18F]-FDG PET Images Using Unsupervised Clustering




AuthorsJaakkola Maria K., Rantala Maria, Jalo Anna, Saari Teemu, Hentilä Jaakko, Helin Jatta S., Nissinen Tuuli A., Eskola Olli, Rajander Johan, Virtanen Kirsi A., Hannukainen Jarna C., López-Picón Francisco, Klén Riku

PublisherHindawi

Publication year2023

JournalInternational Journal of Biomedical Imaging

Journal acronymInternational Journal of Biomedical Imaging

Article number3819587

Volume2023

First page 1

Last page13

eISSN1687-4196

DOIhttps://doi.org/10.1155/2023/3819587

Web address https://www.hindawi.com/journals/ijbi/2023/3819587/

Self-archived copy’s web addresshttps://research.utu.fi/converis/portal/detail/Publication/181911206


Abstract

Clustering time activity curves of PET images have been used to separate clinically relevant areas of the brain or tumours. However, PET image segmentation in multiorgan level is much less studied due to the available total-body data being limited to animal studies. Now, the new PET scanners providing the opportunity to acquire total-body PET scans also from humans are becoming more common, which opens plenty of new clinically interesting opportunities. Therefore, organ-level segmentation of PET images has important applications, yet it lacks sufficient research. In this proof of concept study, we evaluate if the previously used segmentation approaches are suitable for segmenting dynamic human total-body PET images in organ level. Our focus is on general-purpose unsupervised methods that are independent of external data and can be used for all tracers, organisms, and health conditions. Additional anatomical image modalities, such as CT or MRI, are not used, but the segmentation is done purely based on the dynamic PET images. The tested methods are commonly used building blocks of the more sophisticated methods rather than final methods as such, and our goal is to evaluate if these basic tools are suited for the arising human total-body PET image segmentation. First, we excluded methods that were computationally too demanding for the large datasets from human total-body PET scanners. These criteria filtered out most of the commonly used approaches, leaving only two clustering methods, k-means and Gaussian mixture model (GMM), for further analyses. We combined k-means with two different preprocessing approaches, namely, principal component analysis (PCA) and independent component analysis (ICA). Then, we selected a suitable number of clusters using 10 images. Finally, we tested how well the usable approaches segment the remaining PET images in organ level, highlight the best approaches together with their limitations, and discuss how further research could tackle the observed shortcomings. In this study, we utilised 40 total-body [18F] fluorodeoxyglucose PET images of rats to mimic the coming large human PET images and a few actual human total-body images to ensure that our conclusions from the rat data generalise to the human data. Our results show that ICA combined with k-means has weaker performance than the other two computationally usable approaches and that certain organs are easier to segment than others. While GMM performed sufficiently, it was by far the slowest one among the tested approaches, making k-means combined with PCA the most promising candidate for further development. However, even with the best methods, the mean Jaccard index was slightly below 0.5 for the easiest tested organ and below 0.2 for the most challenging organ. Thus, we conclude that there is a lack of accurate and computationally light general-purpose segmentation method that can analyse dynamic total-body PET images.


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Last updated on 2025-27-03 at 22:03