A1 Refereed original research article in a scientific journal

The effect of neural network architecture on virtual H&E staining: Systematic assessment of histological feasibility




AuthorsKhan Umair, Koivukoski Sonja, Valkonen Mira, Latonen Leena, Ruusuvuori Pekka

PublisherCell Press

Publication year2023

JournalPatterns

Journal name in sourcePatterns

Article number100725

Volume4

Issue5

eISSN2666-3899

DOIhttps://doi.org/10.1016/j.patter.2023.100725

Web address https://doi.org/10.1016/j.patter.2023.100725

Self-archived copy’s web addresshttps://research.utu.fi/converis/portal/detail/Publication/179573648


Abstract

Conventional histopathology has relied on chemical staining for over a century. The staining process makes tissue sections visible to the human eye through a tedious and labor-intensive procedure that alters the tissue irreversibly, preventing repeated use of the sample. Deep learning-based virtual staining can potentially alleviate these shortcomings. Here, we used standard brightfield microscopy on unstained tissue sections and studied the impact of increased network capacity on the resulting virtually stained H&E images. Using the generative adversarial neural network model pix2pix as a baseline, we observed that replacing simple convolutions with dense convolution units increased the structural similarity score, peak signal-to-noise ratio, and nuclei reproduction accuracy. We also demonstrated highly accurate reproduction of histology, especially with increased network capacity, and demonstrated applicability to several tissues. We show that network architecture optimization can improve the image translation accuracy of virtual H&E staining, highlighting the potential of virtual staining in streamlining histopathological analysis.


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Last updated on 2025-27-03 at 21:50