A1 Refereed original research article in a scientific journal
The effect of neural network architecture on virtual H&E staining: Systematic assessment of histological feasibility
Authors: Khan Umair, Koivukoski Sonja, Valkonen Mira, Latonen Leena, Ruusuvuori Pekka
Publisher: Cell Press
Publication year: 2023
Journal: Patterns
Journal name in source: Patterns
Article number: 100725
Volume: 4
Issue: 5
eISSN: 2666-3899
DOI: https://doi.org/10.1016/j.patter.2023.100725
Web address : https://doi.org/10.1016/j.patter.2023.100725
Self-archived copy’s web address: https://research.utu.fi/converis/portal/detail/Publication/179573648
Conventional histopathology has relied on chemical staining for over a century. The staining process makes tissue sections visible to the human eye through a tedious and labor-intensive procedure that alters the tissue irreversibly, preventing repeated use of the sample. Deep learning-based virtual staining can potentially alleviate these shortcomings. Here, we used standard brightfield microscopy on unstained tissue sections and studied the impact of increased network capacity on the resulting virtually stained H&E images. Using the generative adversarial neural network model pix2pix as a baseline, we observed that replacing simple convolutions with dense convolution units increased the structural similarity score, peak signal-to-noise ratio, and nuclei reproduction accuracy. We also demonstrated highly accurate reproduction of histology, especially with increased network capacity, and demonstrated applicability to several tissues. We show that network architecture optimization can improve the image translation accuracy of virtual H&E staining, highlighting the potential of virtual staining in streamlining histopathological analysis.
Downloadable publication This is an electronic reprint of the original article. |