A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä
Quantitative parameters of bacterial RNA polymerase open-complex formation, stabilization and disruption on a consensus promoter
Tekijät: Bera Subhas C, America Pim PB, Maatsola Santeri, Seifert Mona, Ostrofet Eugeniu, Cnossen Jelmer, Spermann Monika, Papini Flávia S, Depken Martin, Malinen Anssi M, Dulin David
Kustantaja: Oxford University Press
Julkaisuvuosi: 2022
Journal: Nucleic Acids Research
Tietokannassa oleva lehden nimi: NUCLEIC ACIDS RESEARCH
Lehden akronyymi: NUCLEIC ACIDS RES
Artikkelin numero: gkac560
Vuosikerta: 50
Numero: 13
Aloitussivu: 7511
Lopetussivu: 7528
Sivujen määrä: 18
ISSN: 0305-1048
eISSN: 1362-4962
DOI: https://doi.org/10.1093/nar/gkac560
Verkko-osoite: https://doi.org/10.1093/nar/gkac560
Rinnakkaistallenteen osoite: https://research.utu.fi/converis/portal/detail/Publication/177819629
Transcription initiation is the first step in gene expression, and is therefore strongly regulated in all domains of life. The RNA polymerase (RNAP) first associates with the initiation factor σ to form a holoenzyme, which binds, bends and opens the promoter in a succession of reversible states. These states are critical for transcription regulation, but remain poorly understood. Here, we addressed the mechanism of open complex formation by monitoring its assembly/disassembly kinetics on individual consensus lacUV5 promoters using high-throughput single-molecule magnetic tweezers. We probed the key protein-DNA interactions governing the open-complex formation and dissociation pathway by modulating the dynamics at different concentrations of monovalent salts and varying temperatures. Consistent with ensemble studies, we observed that RNAP-promoter open (RPO) complex is a stable, slowly reversible state that is preceded by a kinetically significant open intermediate (RPI), from which the holoenzyme dissociates. A strong anion concentration and type dependence indicates that the RPO stabilization may involve sequence-independent interactions between the DNA and the holoenzyme, driven by a non-Coulombic effect consistent with the non-template DNA strand interacting with σ and the RNAP β subunit. The temperature dependence provides the energy scale of open-complex formation and further supports the existence of additional intermediates.
Ladattava julkaisu This is an electronic reprint of the original article. |