A1 Refereed original research article in a scientific journal

Improved Synthesis Strategy for N-Methoxy-1,3-oxazinane Nucleic Acids (MOANAs)




AuthorsWallin Josefiina, Lönnberg Tuomas

PublisherWILEY-V C H VERLAG GMBH

Publication year2022

JournalEuropean Journal of Organic Chemistry

Journal name in sourceEUROPEAN JOURNAL OF ORGANIC CHEMISTRY

Journal acronymEUR J ORG CHEM

Article number e202200538

Volume2022

Issue35

Number of pages7

ISSN1434-193X

eISSN1434-193X

DOIhttps://doi.org/10.1002/ejoc.202200538

Web address http://dx.doi.org/10.1002%2Fejoc.202200538

Self-archived copy’s web addresshttps://research.utu.fi/converis/portal/detail/Publication/176586536


Abstract

Dependence of the hydrolysis rate of a series of N-methoxy-2-phenyl-1,3-oxazinanes on the Hammett substituent constant of the substituent of the phenyl ring was determined, yielding a reaction constant p=-1.40 +/- 0.05. Based on this information, 4-(benzoyloxy)benzaldehyde was selected as a protecting group for a new (2R,3S)-4-(methoxyamino)butane-1,2,3-triol phosphoramidite building block. The yield of the preparation of this building block as well as its coupling in automated oligonucleotide synthesis were greatly improved compared to the method reported previously. The 2-[4-(benzoyloxy)phenyl]-1,3-oxazine protection persisted throughout the synthesis of short oligonucleotides but was rapidly removed when the oligonucleotides were released from solid support and dissolved in water.


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