Teemu Kallonen
PhD, MSc
teemu.kallonen@utu.fi ORCID-tunniste: https://orcid.org/0000-0003-1741-6486 |
Mikrobiologia, bakteerigenomiikka, bioinformatiikka
Mikrobistopankki, Biolääketieteen laitos, Lääketieteellinen tdk, Turun yliopisto ja Kliininen mikrobiologia, Turun yliopistollinen keskussairaala
I did my PhD at the University of Turku and the Pertussis reference laboratory, Finnish institute for health and welfare and defended my thesis in 2011. The topic of my research was the evolution and adaptation of Bordetella pertussis, the causative agent of whooping couch, after the initiation of vaccinations.
I did a postdoc (2012-2013) with Prof. Olli Lassila on B cell and plasma cell differentiation after which I changed bact to studying bacteria. I did a postdocs wiht Prof. Julian Parkhill and Prof. Sharon Peacock at the Wellcome Sanger Institute, UK (2014-2016), and Prof. Jukka Corander at the University of Oslo, Norway (2017-2019), using bioinformatic analyses to study whole-genome sequenced bacteria and antibiotic resistance.
A the moment my reseach is still concentrated on WGS analyses and antibiotic resistance as well as microbiome studies.
Main focus of my research is in bacterial genomics, including bioinformatic analyses of population structure, antibiotic resistance and other factors affecting the success of different clones. Recently I have increasingly been involved with several research project investigating the role of the gut microbiome in human diseases e.g. acute appendicitis and prostate cancer.
- Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages (2019)
- Journal of Antimicrobial Chemotherapy
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Signatures of negative frequency dependent selection in colonisation factors and the evolution of a multi-drug resistant lineage of Escherichia coli (2019)
- mBio
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - The first human report of mobile colistin resistance gene, mcr-1, in Finland (2018)
- APMIS
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Bach2 regulates AID-mediated immunoglobulin gene conversion and somatic hypermutation in DT40 B cells (2017)
- European Journal of Immunology
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Genomic landscape of extended-spectrum β-lactamase resistance in Escherichia coli from an urban African setting (2017)
- Journal of Antimicrobial Chemotherapy
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom (2017)
- Genome Medicine
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131 (2017)
- Genome Research
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand (2017)
- Genome Medicine
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - EPEC: A cocktail of virulence (2016)
- Nature Reviews Microbiology
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Looking at Beijing's skyline (2015)
- Nature Reviews Microbiology
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )



