Teemu Kallonen
PhD, MSc
teemu.kallonen@utu.fi ORCID-tunniste: https://orcid.org/0000-0003-1741-6486 |
Mikrobiologia, bakteerigenomiikka, bioinformatiikka
Mikrobistopankki, Biolääketieteen laitos, Lääketieteellinen tdk, Turun yliopisto ja Kliininen mikrobiologia, Turun yliopistollinen keskussairaala
I did my PhD at the University of Turku and the Pertussis reference laboratory, Finnish institute for health and welfare and defended my thesis in 2011. The topic of my research was the evolution and adaptation of Bordetella pertussis, the causative agent of whooping couch, after the initiation of vaccinations.
I did a postdoc (2012-2013) with Prof. Olli Lassila on B cell and plasma cell differentiation after which I changed bact to studying bacteria. I did a postdocs wiht Prof. Julian Parkhill and Prof. Sharon Peacock at the Wellcome Sanger Institute, UK (2014-2016), and Prof. Jukka Corander at the University of Oslo, Norway (2017-2019), using bioinformatic analyses to study whole-genome sequenced bacteria and antibiotic resistance.
A the moment my reseach is still concentrated on WGS analyses and antibiotic resistance as well as microbiome studies.
Main focus of my research is in bacterial genomics, including bioinformatic analyses of population structure, antibiotic resistance and other factors affecting the success of different clones. Recently I have increasingly been involved with several research project investigating the role of the gut microbiome in human diseases e.g. acute appendicitis and prostate cancer.
- Bacterial genomic epidemiology with mixed samples (2021)
- Microbial genomicsWellcome Open Research
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Dynamics of intestinal multidrug-resistant bacteria colonisation contracted by visitors to a high-endemic setting: a prospective, daily, real-time sampling studyHigh-resolution sweep metagenomics using ultrafast read mapping and inference (2021)
- Lancet microbeWellcome Open Research
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Genetic evolution of invasive emm28 Streptococcus pyogenes strains and significant association with puerperal infections in young women in Finland (2021)
- Clinical Microbiology and Infection
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of EnterobacteriaceaeThe binding mechanism of adhesin P subtype to globotetraosylceramide is associated with systemic disease (2021)
- G3: genes, genomes, genetics
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Real-time sampling of travelers shows intestinal colonization by multidrug-resistant bacteria to be a dynamic process with multiple transient acquisitions (2021)
- bioRxiv
(B1 Vertaisarvioimaton kirjoitus tieteellisessä lehdessä ) - High-resolution sweep metagenomics using fast probabilistic inference (2020)
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - (2020)
(B1 Vertaisarvioimaton kirjoitus tieteellisessä lehdessä ) - (2020)
- Journal of Biological Chemistry
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection (2019)
- mBio
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä ) - Emergence of ceftazidime-avibactam-resistant Klebsiella pneumoniae during treatment, Finland, December 2018 (2019)
- Eurosurveillance
(A1 Vertaisarvioitu alkuperäisartikkeli tieteellisessä lehdessä )



