Teemu Kallonen
PhD, MSc
teemu.kallonen@utu.fi ORCID identifier: https://orcid.org/0000-0003-1741-6486 |
Microbiology, Genomics, Bioinformatics
Clinical Microbiome Bank, Institue of Biomedicine, Faculty of Medicine, University of Turku and Clinical Microbiology, Turku University Hospital
I did my PhD at the University of Turku and the Pertussis reference laboratory, Finnish institute for health and welfare and defended my thesis in 2011. The topic of my research was the evolution and adaptation of Bordetella pertussis, the causative agent of whooping couch, after the initiation of vaccinations.
I did a postdoc (2012-2013) with Prof. Olli Lassila on B cell and plasma cell differentiation after which I changed bact to studying bacteria. I did a postdocs wiht Prof. Julian Parkhill and Prof. Sharon Peacock at the Wellcome Sanger Institute, UK (2014-2016), and Prof. Jukka Corander at the University of Oslo, Norway (2017-2019), using bioinformatic analyses to study whole-genome sequenced bacteria and antibiotic resistance.
A the moment my reseach is still concentrated on WGS analyses and antibiotic resistance as well as microbiome studies.
Main focus of my research is in bacterial genomics, including bioinformatic analyses of population structure, antibiotic resistance and other factors affecting the success of different clones. Recently I have increasingly been involved with several research project investigating the role of the gut microbiome in human diseases e.g. acute appendicitis and prostate cancer.
- Bacterial genomic epidemiology with mixed samples (2021)
- Microbial genomics
(A1 Refereed original research article in a scientific journal) - Dynamics of intestinal multidrug-resistant bacteria colonisation contracted by visitors to a high-endemic setting: a prospective, daily, real-time sampling study (2021)
- Lancet microbe
(A1 Refereed original research article in a scientific journal) - Genetic evolution of invasive emm28 Streptococcus pyogenes strains and significant association with puerperal infections in young women in Finland (2021)
- Clinical Microbiology and Infection
(A1 Refereed original research article in a scientific journal) - Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae (2021)
- G3: genes, genomes, genetics
(A1 Refereed original research article in a scientific journal) - Real-time sampling of travelers shows intestinal colonization by multidrug-resistant bacteria to be a dynamic process with multiple transient acquisitions (2021)
- bioRxiv
(B1 Non-refereed article in a scientific journal) - High-resolution sweep metagenomics using fast probabilistic inference (2020)
- Wellcome Open Research
(A1 Refereed original research article in a scientific journal) - High-resolution sweep metagenomics using ultrafast read mapping and inference (2020)
- Wellcome Open Research
(B1 Non-refereed article in a scientific journal) - The binding mechanism of adhesin P subtype to globotetraosylceramide is associated with systemic disease (2020)
- Journal of Biological Chemistry
(A1 Refereed original research article in a scientific journal) - Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection (2019)
- mBio
(A1 Refereed original research article in a scientific journal) - Emergence of ceftazidime-avibactam-resistant Klebsiella pneumoniae during treatment, Finland, December 2018 (2019)
- Eurosurveillance
(A1 Refereed original research article in a scientific journal)



