Tapio Salakoski

- Vice Rector,
University Management (University Management and Central Services)

Faculty of Science and Engineering

tapio.salakoski@utu.fi

+358 29 450 2708

+358 40 032 6978

Vesilinnantie 5

Turku

Artificial Intelligence, especially Language technology and Machine Learning
Bio and Health Informatics
Learning Analytics and Technology
Digital Humanities

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EPE 2017: The Biomedical Event Extraction Downstream Application (2017) Proceedings of the 2017 Shared Task on Extrinsic Parser Evaluation (EPE 2017) at the Fourth International Conference on Dependency Linguistics (Depling 2017) and the 15th International Conference on Parsing Technologies (IWTP 2017) Björne J, Ginter F, Salakoski T
An expanded evaluation of protein function prediction methods shows an improvement in accuracy (2016)
- Genome Biology
Jiang YX, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo DCE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SME, Martelli PL, Profiti G, Casadio R, Cao RZ, Zhong Z, Cheng JL, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Toronen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Dukka BKC, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang HX, Paccanaro A, Gillis J, Sedeno-Cortes AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong QT, Ning W, Zhou YP, Tian WD, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SCE, del Pozo A, Fernandez JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk ADJ, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-e-Silva DC, Vencio RZN, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJE, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P
Automatically assessed electronic exams in programming courses (2016) Proceedings of the Australasian Computer Science Week Teemu Rajala, Erkki Kaila, Rolf Lindén, Einari Kurvinen, Erno Lokkila, Mikko-Jussi Laakso, Tapio Salakoski
Automatic Assessment and Immediate Feedback in Third Grade Mathematics (2016) Proceedings of IICE 2016, Ireland International Conference on Education, Dublin, Ireland, April 25-28, 2016 Kurvinen Einari, Lokkila Erno, Lindén Rolf, Kaila Erkki, Laakso Mikko-Jussi, Salakoski Tapio
Comparison of automatic summarisation methods for clinical free text notes (2016)
- Artificial Intelligence in Medicine
Hans Moen, Laura-Maria Peltonen, Juho Heimonen, Antti Airola, Tapio Pahikkala, Tapio Salakoski, Sanna Salanterä
Deep Learning With Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016 (2016) Proceedings of the 4th BioNLP Shared Task Workshop Farrokh Mehryary, Jari Bjorne, Sampo Pyysalo, Tapio Salakoski, Filip Ginter
Factors Affecting the Availability of Electronic Patient Records for Secondary Purposes – A Case Study (2016) Building Sustainable Health Ecosystems: 6th International Conference on Well-Being in the Information Society, WIS 2016, Tampere, Finland, September 16-18, 2016, Proceedings Antti Vikström, Sanaz Rahimi Moosavi, Hans Moen, Tapio Salakoski, Sanna Salanterä
How students’ programming process differs from experts – a case study with a robot programming exercise (2016)
- EDULEARN proceedings
EDULEARN16 Proceedings E. Lokkila, T. Rajala, A. Veerasamy, P. Enges-Pyykönen, M.J. Laakso, T. Salakoski
Medical Warning System Based on Internet of Things Using Fog Computing (2016) IWBIS 2016 International Workshop on Big Data and Information Security Iman Azimi, Arman Anzanpour, Amir M. Rahmani, Pasi Liljeberg, and Tapio Salakoski
O-CDIO: Emphasizing Design Thinking in CDIO Engineering Cycle (2016)
- International Journal of Engineering Education
Ville Taajamaa, Mona Eskandari, Barbara Karanian, Antti Airola, Tapio Pahikkala, Tapio Salakoski
Programming Misconceptions in an Introductory Level Programming Course Exam (2016) ITiCSE '16 Proceedings of the 2016 ACM Conference on Innovation and Technology in Computer Science Education Kurvinen Einari, Hellgren Niko, Kaila Erkki, Laakso Mikko-Jussi, Salakoski Tapio
Redesigning Introductory Computer Science Courses to Use Tutorial-Based Learning (2016)
- EDULEARN proceedings
EDULEARN16 Proceedings Lokkila Erno, Kaila Erkki, Karavirta Ville, Salakoski Tapio, Laakso Mikko-Jussi
Syntactic analyses and named entity recognition for PubMed and. PubMed Central — up-to-the-minute (2016) Proceedings of the 15th Workshop on Biomedical Natural Language Processing (BioNLP) Kai Hakala, Suwisa Kaewphan, Tapio Salakoski, Filip Ginter
Terveydenhuollon lähiesimiehen työn tehostaminen älykkäällä tiedonhallinnalla akuuttihoidossa (2016) Sanna Salanterä, Stefan Grönroos, Juho Heimonen, Elina Kontio, Heikki Korvenranta, Johan Lilius, Heljä Lundgén-Laine, Laura-Maria Peltonen, Jarno Penttinen, Tapio Salakoski, Eriikka Siirala, Henry Suhonen
The Impact of Lecture Attendance on Exams for Novice Programming Students (2016)
- International Journal of Modern Education and Computer Science
Ashok Kumar Veerasamy, Daryl D'Souza, Rolf Lindén, Erkki Kaila, Mikko-Jussi Laakso, Tapio Salakoski
UTU at SemEval-2016 Task 10: Binary Classification for Expression Detection (BCED) (2016) Proceedings of the 10th International Workshop on Semantic Evaluation (SemEval-2016) Björne J, Salakoski T
Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis (2015)
- BMC Bioinformatics
Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter
A SINO-FINNISH CASE: WHAT WE HAVE LEARNED IN LAUNCHING A DOUBLE MASTER'S DEGREE PROGRAMME (2015)
- EDULEARN proceedings
EDULEARN15: 7TH INTERNATIONAL CONFERENCE ON EDUCATION AND NEW LEARNING TECHNOLOGIES Guo X, Taajamaa V, Westerlund T, Zheng LR, Tenhunen H, Salakoski T
Cancer Progression Classification for Mutation Analysis (2015) The 14th Annual International Conference On Critical Assessment of Massive Data Analysis (CAMDA) Björne J, Salakoski T
Care episode retrieval: distributional semantic models for information retrieval in the clinical domain (2015)
- BMC Medical Informatics and Decision Making
Hans Moen, Filip Ginter, Erwin Marsi, Laura-Maria Peltonen, Tapio Salakoski, Sanna Salanterä