Pedro Puigbo - UTU Research Portal

Pedro Puigbo

- Docent,
Department of Biology (Faculty of Science)

pepuav@utu.fi

Personal Web site

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Evolutionary Genomics, Microbial Genomics, Evolution, Phylogenomics, Computational Biology, Bioinformatics

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Use of Live Biopreservatives and Bacteriophages to Enhance the Safety of Meat Products (2025)
- Life
Rodriguez-Marca, Cristina; Domenech-Coca, Cristina; Nakamura, Miho; Ortega-Olive, Nadia; Puigbo, Pere
Glyphosate residues in soil and phosphate fertilizer affect foliar endophytic microbial community composition and phytohormone levels in potato (2024)
- Phytobiomes journal
Mathew, Suni Anie; Jeevannavar, Aditya; Helander, Marjo; Tamminen, Manu; Puigbò, Pere; Rainio, Miia; Saikkonen, Kari; Fuchs, Benjamin
Pollution-related changes in nest microbiota: Implications for growth and
fledging in three passerine birds (2024)
- Environmental Pollution
Leino, Lyydia; Vesterinen, Eero; Sánchez-Virosta, Pablo; Puigbò, Pere; Eeva, Tapio; Rainio, Miia
Toward an integrated understanding of how extreme polar light regimes, hybridization, and light-sensitive microbes shape global biodiversity (2024)
- One Earth
Saikkonen, Kari; Birge, Traci; Fuchs, Benjamin; Helander, Marjo; Ihalainen, Janne A.; Nissinen, Riitta; Puigbò, Pere
Use of the Phylobone database for the annotation of bone extracellular matrix proteins in reindeer (Rangifer tarandus) (2024)
- Science Progress
Sánchez-Reverté Alba, Fontcuberta-Rigo Margalida, Nakamura Miho, Puigbò Pere
Ecosystem consequences of herbicides: the role of microbiome (2023)
- Trends in Ecology and Evolution
Ruuskanen Suvi, Fuchs Benjamin, Nissinen Riitta, Puigbò Pedro, Rainio Miia, Saikkonen Kari, Helander Marjo
Glyphosate-based herbicide use affects individual microbial taxa in strawberry endosphere but not the microbial community composition (2023)
- Journal of Applied Microbiology
Mathew Suni, Fuchs Benjamin, Nissinen Riita, Helander Marjo, Puigbò Pere, Saikkonen Kari, Muola Anne
Phylobone: a comprehensive database of bone extracellular matrix proteins in human and model organisms (2023)
- Bone Research
Fontcuberta-Rigo Margalida, Nakamura Miho, Puigbò Pere
The Mutational Landscape of SARS-CoV-2 (2023)
- International Journal of Molecular Sciences
Saldivar-Espinoza Bryan, Garcia-Segura Pol, Novau-Ferré Nil, Macip Guillem, Martínez Ruben, Puigbò Pere, Cereto-Massagué Adrià, Pujadas Gerard, Garcia-Vallve Santiago
Does Glyphosate Affect the Human Microbiota? (2022)
- Life
Puigbò Pere, Leino Lyydia I, Rainio Miia J, Saikkonen Kari, Saloniemi Irma, Helander Marjo
Prediction of Recurrent Mutations in SARS-CoV-2 Using Artificial Neural Networks (2022)
- International Journal of Molecular Sciences
Saldivar-Espinoza Bryan, Macip Guillem, Garcia-Segura Pol, Mestres-Truyol Júlia, Puigbò Pere, Cereto-Massague Adrià, Pujadas Gerard, Garcia-Vallve Santiago
Quantification of the Potential Impact of Glyphosate-Based Products on Microbiomes (2022)
- Journal of Visualized Experiments
Mathew Suni Anie, Muola Anne, Saikkonen Kari, Saloniemi Irma, Helander Marjo, Puigbò Pere
Rethinking the Intrinsic Sensitivity of Fungi to Glyphosate (2022)
- Biotech
Tall Tuomas, Puigbò Pere
Why Is the UAG (Amber) Stop Codon Almost Absent in Highly Expressed Bacterial Genes? (2022)
- Life
Belin Dominique, Puigbò Pere
Adaptation of bacteria to glyphosate: a microevolutionary perspective of the enzyme 5-enolpyruvylshikimate-3-phosphate synthase (2021)
- Environmental Microbiology Reports
Rainio Miia J, Ruuskanen Suvi, Helander Marjo, Saikkonen Kari, Saloniemi Irma, Puigbò Pere
Alterations in Metabolome and Microbiome Associated with an Early Stress Stage in Male Wistar Rats: A Multi-Omics Approach (2021)
- International Journal of Molecular Sciences
Hernandez-Baixauli Julia, Puigbò Pere, Abasolo Nerea, Palacios-Jordan Hector, Foguet-Romero Elisabet, Suñol David, Galofré Mar, Caimari Antoni, Baselga-Escudero Laura, Bas Josep MD, Mulero Miquel
An Unsupervised Algorithm for Host Identification in Flaviviruses (2021)
- Life
Truong Phuoc Nguyen, Garcia-Vallvé Santiago, Puigbò Pere
A Pilot Study for Metabolic Profiling of Obesity-Associated Microbial Gut Dysbiosis in Male Wistar Rats (2021)
- Biomolecules
Hernandez-Baixauli Julia, Puigbo Pere, Torrell Helena, Palacios-Jordan Hector, Ripoll Vicent J. Ribas, Caimari Antoni, Del Bas Josep M., Baselga-Escudero Laura, Mulero Miquel
Classification of the glyphosate target enzyme (5-enolpyruvylshikimate-3-phosphate synthase) for assessing sensitivity of organisms to the herbicide (2021)
- Journal of Hazardous Materials
Leino Lyydia, Tall Tuomas, Helander Marjo, Saloniemi Irma, Saikkonen Kari, Ruuskanen Suvi, Puigbò Pere
Genome-Wide Comparative Analysis of Phylogenetic Trees: The Prokaryotic Forest of Life (2019) Evolutionary Genomics: Statistical and Computational Methods Puigbò Pere, Wolf Yuri I., Koonin Eugene V.