Pedro Puigbo - UTU Research Portal

Pedro Puigbo

- Docent,
Department of Biology (Faculty of Science)

pepuav@utu.fi

Personal Web site

Google Scholar

Areas of expertise

Evolutionary Genomics, Microbial Genomics, Evolution, Phylogenomics, Computational Biology, Bioinformatics

Publications

2 of 2

Six-week endurance exercise alters gut metagenome that is not reflected in systemic metabolism in over-weight women (2018)
- Frontiers in Microbiology
Eveliina Munukka, Juha P. Ahtiainen, Pere Puigbó, Sirpa Jalkanen, Katja Pahkala, Anniina Keskitalo, Urho M. Kujala, Sami Pietilä, Maija Hollmén, Laura Elo, Pentti Huovinen, Giuseppe D'Auria, Satu Pekkala
(A1 Refereed original research article in a scientific journal)
Reconstruction of the evolution of microbial defense systems (2017)
- BMC Evolutionary Biology
Puigbò, Makarova, Kristensen, Wolf, Koonin
(A1 Refereed original research article in a scientific journal)
Inevitability of Genetic Parasites (2016)
- Genome Biology and Evolution
Iranzo J, Puigbo P, Lobkovsky AE, Wolf YI, Koonin EV
(A1 Refereed original research article in a scientific journal)
Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes (2014)
- BMC Biology
Puigbo P, Lobkovsky AE, Kristensen DM, Wolf YI, Koonin EV
(A1 Refereed original research article in a scientific journal)
Seeing the Tree of Life behind the phylogenetic forest (2013)
- BMC Biology
Puigbo P, Wolf YI, Koonin EV
(A1 Refereed original research article in a scientific journal)
Genome-wide comparative analysis of phylogenetic trees: the prokaryotic forest of life (2012)
- Methods in Molecular Biology
Evolutionary Genomics : Statistical and Computational Methods, Volume 2 Puigbò P., Wolf Y.I., Koonin E.V.
(A3 Refereed book chapter or chapter in a compilation book)
Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes (2012)
- Environmental Microbiology
Galperin MY, Mekhedov SL, Puigbo P, Smirnov S, Wolf YI, Rigden DJ
(A2 Refereed review article in a scientific journal )
Phylogenomics of Prokaryotic Ribosomal Proteins (2012)
- PLoS ONE
Yutin N, Puigbo P, Koonin EV, Wolf YI
(A1 Refereed original research article in a scientific journal)
A comprehensive census of horizontal gene transfers from prokaryotes to unikonts (2011)
- Genome Biology
Puigbo P, Mekhedov S, Wolf YI, Koonin EV
(Other publication)
Comparison of phylogenetic trees and search for a central trend in the "forest of life" (2011)
- Journal of Computational Biology
Koonin EV, Puigbò P, Wolf YI
(A1 Refereed original research article in a scientific journal)
Fitness costs limit influenza A virus hemagglutinin glycosylation as an immune evasion strategy (2011)
- Proceedings of the National Academy of Sciences of the United States of America
Das SR, Hensley SE, David A, Schmidt L, Gibbs JS, Puigbo P, Ince WL, Bennink JR, Yewdell JW
(A1 Refereed original research article in a scientific journal)
Genomics of the Proteorhodopsin-Containing Marine Flavobacterium Dokdonia sp Strain MED134 (2011)
- Applied and Environmental Microbiology
Gonzalez JM, Pinhassi J, Fernandez-Gomez B, Coll-Llado M, Gonzalez-Velazquez M, Puigbo P, Jaenicke S, Gomez-Consarnau L, Fernandez-Guerra A, Goesmann A, Pedros-Alio C
(A1 Refereed original research article in a scientific journal)
Glycosylation Focuses Sequence Variation in the Influenza A Virus H1 Hemagglutinin Globular Domain (2010)
- PLoS Pathogens
Das SR, Puigbo P, Hensley SE, Hurt DE, Bennink JR, Yewdell JW
(A1 Refereed original research article in a scientific journal)