Masi Valkonen - UTU Research Portal

Masi Valkonen

- Doctoral Researcher,
Institute of Biomedicine (Faculty of Medicine)

masi.f.valkonen@utu.fi

Publications

A systematic approach to study the effects of acquisition parameters and biological factors on computerized mammography analysis using ex vivo human tissue: A protocol description (2025)
- PLoS ONE
Hernandez, Nicole; Pakarinen, Tomppa; Salminen, Annukka; Castro, Santiago Laguna; Karhunen-Enckell, Ulla; Hannula, Markus; Heljasvaara, Ritva; Hyttinen, Jari; Joensuu, Katriina; Jokelainen, Otto; Jukkola, Arja; Karppinen, Sanna-Maria; Lindgren, Auni; Lääperi, Eero; Peuhu, Emilia; Pihlajaniemi, Taina; Prunskaite-Hyyryläinen, Renata; Rilla, Kirsi; Ruusuvuori, Pekka; Latonen, Leena; Tolonen, Teemu; Valkonen, Masi; Valkonen, Mira; Vuorlaakso, Miska; Pertuz, Said; Rinta-Kiikka, Irina; Arponen, Otso
(A1 Refereed original research article in a scientific journal)
Development and retrospective validation of an artificial intelligence system for diagnostic assessment of prostate biopsies: study protocol (2025)
- BMJ Open
Mulliqi, Nita; Blilie, Anders; Ji, Xiaoyi; Szolnoky, Kelvin; Olsson, Henrik; Titus, Matteo; Martinez Gonzalez, Geraldine; Boman, Sol Erika; Valkonen, Masi; Gudlaugsson, Einar; Kjosavik, Svein Reidar; Asenjo, Jose; Gambacorta, Marcello; Libretti, Paolo; Braun, Marcin; Kordek, Radzislaw; Lowicki, Roman; Hotakainen, Kristina; Vare, Paivi; Pedersen, Bodil Ginnerup; Sorensen, Karina Dalsgaard; Ulhoi, Benedicte Parm; Rantalainen, Mattias; Ruusuvuori, Pekka; Delahunt, Brett; Samaratunga, Hemamali; Tsuzuki, Toyonori; Janssen, Emilius Adrianus Maria; Egevad, Lars; Kartasalo, Kimmo; Eklund, Martin
(A1 Refereed original research article in a scientific journal)
The ACROBAT 2022 Challenge : Automatic Registration Of Breast Cancer Tissue (2024)
- Medical Image Analysis
Weitz, Philippe; Valkonen, Masi; Solorzano, Leslie; Carr, Circe; Kartasalo, Kimmo; Boissin, Constance; Koivukoski, Sonja; Kuusela, Aino; Rasic, Dusan; Feng, Yanbo; Pouplier, Sandra Sinius; Sharma, Abhinav; Eriksson, Kajsa Ledesma; Robertson, Stephanie; Marzahl, Christian; Gatenbee, Chandler D.; Anderson, Alexander R.A.; Wodzinski, Marek; Jurgas, Artur; Marini, Niccolò; Atzori, Manfredo; Müller, Henning; Budelmann, Daniel; Weiss, Nick; Heldmann, Stefan; Lotz, Johannes; Wolterink, Jelmer M.; De Santi, Bruno; Patil, Abhijeet; Sethi, Amit; Kondo, Satoshi; Kasai, Satoshi; Hirasawa, Kousuke; Farrokh, Mahtab; Kumar, Neeraj; Greiner, Russell; Latonen, Leena; Laenkholm, Anne-Vibeke; Hartman, Johan; Ruusuvuori, Pekka; Rantalainen, Mattias
(A1 Refereed original research article in a scientific journal)
Volumetric analysis of the terminal ductal lobular unit architecture and cell phenotypes in the human breast (2024)
- Cell Reports
Paavolainen, Oona; Peurla, Markus; Koskinen, Leena M.; Pohjankukka, Jonna; Saberi, Kamyab; Tammelin, Ella; Sulander, Suvi-Riitta; Valkonen, Masi; Mourao, Larissa; Boström, Pia; Brück, Nina; Ruusuvuori, Pekka; Scheele, Colinda L.G.J.; Hartiala, Pauliina; Peuhu, Emilia
(A1 Refereed original research article in a scientific journal)
A Multi-Stain Breast Cancer Histological Whole-Slide-Image Data Set from Routine Diagnostics (2023)
- Scientific Data
Weitz P, Valkonen M, Solorzano L, Carr C, Kartasalo K, Boissin C, Koivukoski S, Kuusela A, Rasic D, Feng YB, Pouplier SS, Sharma A, Eriksson KL, Latonen L, Laenkholm AV, Hartman J, Ruusuvuori P, Rantalainen M
(A1 Refereed original research article in a scientific journal)
Genomic characterization of IDH-mutant astrocytoma progression to grade 4 in the treatment setting (2023)
- Acta Neuropathologica Communications
Rautajoki Kirsi, Jaatinen Serafiina, Hartewig Anja, Tiihonen Aliisa, Annala Matti, Salonen Iida, Valkonen Masi, Simola Vili, Vuorinen Elisa M., Kivinen Anni, Rauhala Minna, Nurminen Riikka, Maass Kendra, Lahtela Sirpa-Liisa, Jukkola Arja, Yli-Harja Olli, Helen Pauli, Pajtler Kristian, Ruusuvuori Pekka, Haapasalo Joonas, Zhang Wei, Haapasalo Hannu, Nykter Matti
(A1 Refereed original research article in a scientific journal)
Interobserver reproducibility of cribriform cancer in prostate needle biopsies and validation of International Society of Urological Pathology criteria (2023)
- Histopathology
Egevad Lars, Delahunt Brett, Iczkowski Kenneth A, van der Kwast Theo, van Leenders Geert JLH, Leite Katia RM, Pan Chin-Chen, Samaratunga Hemamali, Tsuzuki Toyonori, Mulliqi Nita, Ji Xiaoyi, Olsson Henrik, Valkonen Masi, Ruusuvuori Pekka, Eklund Martin, Kartasalo Kimmo
(A1 Refereed original research article in a scientific journal)
Artificial intelligence for diagnosis and Gleason grading of prostate cancer: the PANDA challenge (2022)
- Nature Medicine
Bulten Wouter, Kartasalo Kimmo, Chen Po-Hsuan Cameron, Ström Peter, Pinckaers Hans, Nagpal Kunal, Cai Yuannan, Steiner David F., van Boven Hester, Vink Robert, Hulsbergen-van de Kaa Christina, van der Laak Jeroen, Amin Mahul B., Evans Andrew J., van der Kwast Theodorus, Allan Robert, Humphrey Peter A., Grönberg Henrik, Samaratunga Hemamali, Delahunt Brett, Tsuzuki Toyonori, Häkkinen Tomi, Egevad Lars, Demkin Maggie, Dane Sohier, Tan Fraser, Valkonen Masi, Corrado Greg S., Peng Lily, Mermel Craig H., Ruusuvuori Pekka, Litjens Geert, Eklund Martin, the PANDA challenge consortium
(A1 Refereed original research article in a scientific journal)
Spatial analysis of histology in 3D: quantification and visualization of organ and tumor level tissue environment (2022)
- Heliyon
Ruusuvuori Pekka, Valkonen Masi, Kartasalo Kimmo, Valkonen Mira, Visakorpi Tapio, Nykter Mira, Latonen Leena
(A1 Refereed original research article in a scientific journal)
Predicting Molecular Phenotypes from Histopathology Images: A Transcriptome-Wide Expression-Morphology Analysis in Breast Cancer (2021)
- Cancer Research
Wang Yinxi, Kartasalo Kimmo, Weitz Philippe, Acs Balazs, Valkonen Masi, Larsson Christer, Ruusuvuori Pekka, Hartman Johan, Rantalainen Mattias
(A1 Refereed original research article in a scientific journal)