Leo Lahti
Professor
Data science; AI; Machine Learning; Applied statistics; Statistical programming; Probabilistic models; Complex natural and social systems; Microbial ecology; Computational humanities; Open knowledge
Leo Lahti is professor in Data Science in University of Turku, Finland. His research team focuses on computational analysis and modeling of complex natural and social systems. Lahti obtained doctoral degree (DSc) from Aalto University in Finland (2010), developing probabilistic machine learning methods for high-throughput life science data integration. This was followed by subsequent postdoctoral research at EBI/Hinxton (UK), Wageningen University (NL), and VIB/KU Leuven (BE). Lahti has coordinated international networks in data science methods and applications and organizes international data science training events on a regular basis. He is vice chair for the national coordination on open science Finland, executive committee member for the International Science Council Committee on Data (2023-2025), member of the global Bioconductor Community Advisory Board, and founder of the open science work group of Open Knowledge Finland ry. For more information, see the research homepage iki.fi/Leo.Lahti
Computational scientist focusing on change in complex natural and social systems, and how they can be understood through a computational lens.
Computational and data science, statistical and probabilistic programming, machine learning, AI, applied statistics, ecological models, open science
- A cohort study in family triads : impact of gut microbiota composition and early life exposures on intestinal resistome during the first two years of life (2024) Jokela, Roosa; Pärnänen, Katariina MM; Ponsero, Alise J; Lahti, Leo; Kolho, Kaija-Leena; de Vos, Willem M; Salonen, Anne
- A concept for international societally relevant microbiology education and microbiology knowledge promulgation in societyEpidemic transmission modeling with fractional derivatives and environmental pathogensIntegration of polygenic and gut metagenomic risk prediction for common diseases (2024)
- Microbial BiotechnologyInternational Journal of BiomathematicsNature Aging
Timmis, Kenneth; Hallsworth, John E.; McGenity, Terry J.; Armstrong, Rachel; Colom, María Francisca; Karahan, Zeynep Ceren; Chavarría, Max; Bernal, Patricia; Boyd, Eric S.; Ramos, Juan Luis; Kaltenpoth, Martin; Pruzzo, Carla; Clarke, Gerard; López-Garcia, Purificación; Yakimov, Michail M.; Perlmutter, Jessamyn; Greening, Chris; Eloe-Fadrosh, Emiley; Verstraete, Willy; Nunes, Olga C.; Kotsyurbenko, Oleg; Nikel, Pablo Iván; Scavone, Paola; Häggblom, Max M.; Lavigne, Rob; Le Roux, Frédérique; Timmis, James K.; Parro, Victor; Michán, Carmen; García, José Luis; Casadevall, Arturo; Payne, Shelley M.; Frey, Joachim; Koren, Omry; Prosser, James I.; Lahti, Leo; Lal, Rup; Anand, Shailly; Sood, Utkarsh; Offre, Pierre; Bryce, Casey C.; Mswaka, Allen Y.; Jores, Jörg; Kaçar, Betül; Blank, Lars Mathias; Maaßen, Nicole; Pope, Phillip B.; Banciu, Horia L.; Armitage, Judith; Lee, Sang Yup; Wang, Fengping; Makhalanyane, Thulani P.; Gilbert, Jack A.; Wood, Thomas K.; Vasiljevic, Branka; Soberón, Mario; Udaondo, Zulema; Rojo, Fernando; Tamang, Jyoti Prakash; Giraud, Tatiana; Ropars, Jeanne; Ezeji, Thaddeus; Müller, Volker; Danbara, Hirofume; Averhoff, Beate; Sessitsch, Angela; Partida-Martínez, Laila Pamela; Huang, Wei; Molin, Søren; Junier, Pilar; Amils, Ricardo; Wu, Xiao-Lei; Ron, Eliora; Erten, Huseyin; de Martinis, Elaine Cristina Pereira; Rapoport, Alexander; Öpik, Maarja; Pokatong, W. Donald R.; Stairs, Courtney; Amoozegar, Mohammad Ali; Serna, Jéssica Gil
- Algorithm 1047: FdeSolver, a Julia Package for Solving Fractional Differential EquationsLimROTS Bioconductor software package (2024)
- ACM Transactions on Mathematical Software
Khalighi, Moein; Benedetti, Giulio; Lahti, Leo
- Association between butyrate-producing gut bacteria and the risk of infectious disease hospitalisation : results from two observational, population-based microbiome studiesMultikingdom oral microbiome interactions in early-onset cryptogenic ischemic stroke (2024)
- Lancet microbeNature Reviews Microbiology
Kullberg, Robert F J; Wikki, Irina; Haak, Bastiaan W; Kauko, Anni; Galenkamp, Henrike; Peters-Sengers, Hessel; Butler, Joe M; Havulinna, Aki S; Palmu, Joonatan; McDonald, Daniel; Benchraka, Chouaib; Abdel-Aziz, Mahmoud I; Prins, Maria; Maitland van der Zee, Anke H; van den Born, Bert-Jan; Jousilahti, Pekka; de Vos, Willem M; Salomaa, Veikko; Knight, Rob; Lahti, Leo; Nieuwdorp, Max; Niiranen, Teemu; Wiersinga, W Joost
- Association of Long-Term Habitual Dietary Fiber Intake since Infancy with Gut Microbiota Composition in Young Adulthood (2024) Heiskanen, M. A.; Aatsinki, A.; Hakonen, P.; Kartiosuo, N.; Munukka, E.; Lahti, L.; Keskitalo, A.; Huovinen, P.; Niinikoski, H.; Viikari, J.; Rönnemaa, T.; Lagström, H.; Jula, A.; Raitakari, O.; Rovio, S. P.; Pahkala, K.
- Associations between gut microbiota and incident fractures in the FINRISK cohort (2024)
- npj biofilms and microbiomes
Grahnemo, Louise; Kambur, Oleg; Lahti, Leo; Jousilahti, Pekka; Niiranen, Teemu; Knight, Rob; Salomaa, Veikko; Havulinna, Aki S.; Ohlsson, Claes
- Bone marrow metabolism is affected by body weight and response to exercise training varies according to anatomical location (2024)
- Diabetes, Obesity and MetabolismNature Biotechnology
Ojala, R; Hentilä, J; Lietzén, MS; Arponen, M; Heiskanen, MA; Honkala, SM; Virtanen, H; Koskensalo, K; Lautamäki R; Löyttyniemi, E; Parkkola, R; Heinonen, OJ; Malm, T; Lahti, L; Rinne, J; Eskola, O; Rajander, J; Pietiläinen, KH; Kaprio, J; Ivaska, KK; Hannukainen, JC
- Daily skin-to-skin contact alters microbiota development in healthy full-term infantsInfant gut microbiota and negative and fear reactivity (2024)
- Gut MicrobesDevelopment and Psychopathology
Eckermann, Henrik Andreas; Meijer, Jennifer; Cooijmans, Kelly; Lahti, Leo; de Weerth, Carolina
- Effects of Obesity and Exercise on Hepatic and Pancreatic Lipid Content and Glucose Metabolism : PET Studies in Twins Discordant for BMI (2024) Lietzén, Martin S.; Mari, Andrea; Ojala, Ronja; Hentilä, Jaakko; Koskensalo, Kalle; Lautamäki, Riikka; Löyttyniemi, Eliisa; Parkkola, Riitta; Saunavaara, Virva; Kirjavainen, Anna K.; Rajander, Johan; Malm, Tarja; Lahti, Leo; Rinne, Juha O.; Pietiläinen, Kirsi H.; Iozzo, Patricia; Hannukainen, Jarna C.
- (2024) Khalighi, Moein; Ndaïrou, Faïçal; Lahti, Leo
- Examining the healthy human microbiome conceptMicrobiome confounders and quantitative profiling challenge predicted microbial targets in colorectal cancer development (2024) Joos, Raphaela; Boucher, Katy; Lavelle, Aonghus; Arumugam, Manimozhiyan; Blaser, Martin J.; Claesson, Marcus J.; Clarke, Gerard; Cotter, Paul D.; De Sordi, Luisa; Dominguez-Bello, Maria G.; Dutilh, Bas E.; Ehrlich, Stanislav D.; Ghosh, Tarini Shankar; Hill, Colin; Junot, Christophe; Lahti, Leo; Lawley, Trevor D.; Licht, Tine R.; Maguin, Emmanuelle; Makhalanyane, Thulani P.; Marchesi, Julian R.; Matthijnssens, Jelle; Raes, Jeroen; Ravel, Jacques; Salonen, Anne; Scanlan, Pauline D.; Shkoporov, Andrey; Stanton, Catherine; Thiele, Ines; Tolstoy, Igor; Walter, Jens; Yang, Bo; Yutin, Natalia; Zhernakova, Alexandra; Zwart, Hub; Doré, Joël D.; Ross, R. Paul; Human Microbiome Action Consortium
- Fecal microbiota profiles of growing pigs and their relation to growth performance (2024)
- PLoS ONEISME Communications
König, Emilia; Beasley, Shea; Heponiemi, Paulina; Kivinen, Sanni; Räkköläinen, Jaakko; Salminen, Seppo; Collado, Maria Carmen; Borman, Tuomas; Lahti, Leo; Piirainen, Virpi; Valros, Anna; Heinonen, Mari
- Fewer culturable Lactobacillaceae species identified in faecal samples of pigs performing manipulative behaviourPrint culture and economic constraints : A quantitative analysis of book prices in eighteenth-century Britain (2024) König, Emilia; Heponiemi, Paulina; Kivinen, Sanni; Räkköläinen, Jaakko; Beasley, Shea; Borman, Tuomas; Collado, Maria Carmen; Hukkinen, Vilja; Junnila, Jouni; Lahti, Leo; Norring, Marianna; Piirainen, Virpi; Salminen, Seppo; Heinonen, Mari; Valros, Anna
- Greengenes2 unifies microbial data in a single reference tree (2024) McDonald, Daniel; Jiang, Yueyu; Balaban, Metin; Cantrell, Kalen; Zhu, Qiyun; Gonzalez, Antonio; Morton, James T.; Nicolaou, Giorgia; Parks, Donovan H.; Karst, Søren M.; Albertsen, Mads; Hugenholtz, Philip; DeSantis, Todd; Song, Se Jin; Bartko, Andrew; Havulinna, Aki S.; Jousilahti, Pekka; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Lahti, Leo; Mirarab, Siavash; Knight, Rob
- (2024) Huovinen, Venla; Aatsinki, Anna-Katariina; Kataja, Eeva-Leena; Munukka, Eveliina; Keskitalo, Anniina; Lamichhane, Santosh; Raunioniemi, Peppi; Bridgett, David J.; Lahti, Leo; O’Mahony, Siobhain M.; Dickens, Alex; Korja, Riikka; Karlsson, Hasse; Nolvi, Saara; Karlsson, Linnea
- (2024) Liu, Yang; Ritchie, Scott C.; Teo, Shu Mei; Ruuskanen, Matti O.; Kambur, Oleg; Zhu, Qiyun; Sanders, Jon; Vázquez-Baeza, Yoshiki; Verspoor, Karin; Jousilahti, Pekka; Lahti, Leo; Niiranen, Teemu; Salomaa, Veikko; Havulinna, Aki S.; Knight, Rob; Méric, Guillaume; Inouye, Michael
- (2024) Youssef, Ali; Jeba, Akewak; Lahti, Leo; Coffey, Eleanor
- (2024) Tito, Raúl Y.; Verbandt, Sara; Aguirre Vazquez, Marta; Lahti, Leo; Verspecht, Chloe; Lloréns-Rico, Verónica; Vieira-Silva, Sara; Arts, Janine; Falony, Gwen; Dekker, Evelien; Reumers, Joke; Tejpar, Sabine; Jeroen, Raes
- (2024) Manzoor, Muhammed; Leskelä, Jaakko; Pietiäinen, Milla; Martinez-Majander, Nicolas; Ylikotila, Pauli; Könönen, Eija; Niiranen, Teemu; Lahti, Leo; Sinisalo, Juha; Putaala, Jukka; Pussinen, Pirkko J; Paju, Susanna
- (2024)
- Explorations in Economic History
Tiihonen, Iiro; Lahti, Leo; Tolonen, Mikko