Leo Lahti
Professor
Data science; AI; Machine Learning; Applied statistics; Statistical programming; Probabilistic models; Complex natural and social systems; Microbial ecology; Computational humanities; Open knowledge
Leo Lahti is professor in Data Science in University of Turku, Finland. His research team focuses on computational analysis and modeling of complex natural and social systems. Lahti obtained doctoral degree (DSc) from Aalto University in Finland (2010), developing probabilistic machine learning methods for high-throughput life science data integration. This was followed by subsequent postdoctoral research at EBI/Hinxton (UK), Wageningen University (NL), and VIB/KU Leuven (BE). Lahti has coordinated international networks in data science methods and applications and organizes international data science training events on a regular basis. He is vice chair for the national coordination on open science Finland, executive committee member for the International Science Council Committee on Data (2023-2025), member of the global Bioconductor Community Advisory Board, and founder of the open science work group of Open Knowledge Finland ry. For more information, see the research homepage iki.fi/Leo.Lahti
Computational scientist focusing on change in complex natural and social systems, and how they can be understood through a computational lens.
Computational and data science, statistical and probabilistic programming, machine learning, AI, applied statistics, ecological models, open science
- Algorithm 1047: FdeSolver, a Julia Package for Solving Fractional Differential Equations (2024)
- ACM Transactions on Mathematical Software
Khalighi, Moein; Benedetti, Giulio; Lahti, Leo
- Association between butyrate-producing gut bacteria and the risk of infectious disease hospitalisation : results from two observational, population-based microbiome studies (2024) Kullberg, Robert F J; Wikki, Irina; Haak, Bastiaan W; Kauko, Anni; Galenkamp, Henrike; Peters-Sengers, Hessel; Butler, Joe M; Havulinna, Aki S; Palmu, Joonatan; McDonald, Daniel; Benchraka, Chouaib; Abdel-Aziz, Mahmoud I; Prins, Maria; Maitland van der Zee, Anke H; van den Born, Bert-Jan; Jousilahti, Pekka; de Vos, Willem M; Salomaa, Veikko; Knight, Rob; Lahti, Leo; Nieuwdorp, Max; Niiranen, Teemu; Wiersinga, W Joost
- Association of Long-Term Habitual Dietary Fiber Intake since Infancy with Gut Microbiota Composition in Young Adulthood (2024) Heiskanen MA, Aatsinki A, Hakonen P, Kartiosuo N, Munukka E, Lahti L, Keskitalo A, Huovinen P, Niinikoski H, Viikari J, Rönnemaa T, Lagström H, Jula A, Raitakari O, Rovio SP, Pahkala K
- Associations between gut microbiota and incident fractures in the FINRISK cohort (2024)
- npj biofilms and microbiomes
Grahnemo, Louise; Kambur, Oleg; Lahti, Leo; Jousilahti, Pekka; Niiranen, Teemu; Knight, Rob; Salomaa, Veikko; Havulinna, Aki S.; Ohlsson, Claes
- Bone marrow metabolism is affected by body weight and response to exercise training varies according to anatomical location (2024)
- Diabetes, Obesity and Metabolism
Ojala, R; Hentilä, J; Lietzén, MS; Arponen, M; Heiskanen, MA; Honkala, SM; Virtanen, H; Koskensalo, K; Lautamäki R; Löyttyniemi, E; Parkkola, R; Heinonen, OJ; Malm, T; Lahti, L; Rinne, J; Eskola, O; Rajander, J; Pietiläinen, KH; Kaprio, J; Ivaska, KK; Hannukainen, JC
- Daily skin-to-skin contact alters microbiota development in healthy full-term infants (2024) Eckermann Henrik Andreas, Meijer Jennifer, Cooijmans Kelly, Lahti Leo, de Weerth Carolina
- Effects of Obesity and Exercise on Hepatic and Pancreatic Lipid Content and Glucose Metabolism : PET Studies in Twins Discordant for BMI (2024) Lietzén, Martin S.; Mari, Andrea; Ojala, Ronja; Hentilä, Jaakko; Koskensalo, Kalle; Lautamäki, Riikka; Löyttyniemi, Eliisa; Parkkola, Riitta; Saunavaara, Virva; Kirjavainen, Anna K.; Rajander, Johan; Malm, Tarja; Lahti, Leo; Rinne, Juha O.; Pietiläinen, Kirsi H.; Iozzo, Patricia; Hannukainen, Jarna C.
- Epidemic transmission modeling with fractional derivatives and environmental pathogens (2024)
- International Journal of Biomathematics
Khalighi, Moein; Ndaïrou, Faïçal; Lahti, Leo
- Examining the healthy human microbiome concept (2024)
- Nature Reviews Microbiology
Joos, Raphaela; Boucher, Katy; Lavelle, Aonghus; Arumugam, Manimozhiyan; Blaser, Martin J.; Claesson, Marcus J.; Clarke, Gerard; Cotter, Paul D.; De Sordi, Luisa; Dominguez-Bello, Maria G.; Dutilh, Bas E.; Ehrlich, Stanislav D.; Ghosh, Tarini Shankar; Hill, Colin; Junot, Christophe; Lahti, Leo; Lawley, Trevor D.; Licht, Tine R.; Maguin, Emmanuelle; Makhalanyane, Thulani P.; Marchesi, Julian R.; Matthijnssens, Jelle; Raes, Jeroen; Ravel, Jacques; Salonen, Anne; Scanlan, Pauline D.; Shkoporov, Andrey; Stanton, Catherine; Thiele, Ines; Tolstoy, Igor; Walter, Jens; Yang, Bo; Yutin, Natalia; Zhernakova, Alexandra; Zwart, Hub; Doré, Joël D.; Ross, R. Paul; Human Microbiome Action Consortium
- Fecal microbiota profiles of growing pigs and their relation to growth performance (2024) König, Emilia; Beasley, Shea; Heponiemi, Paulina; Kivinen, Sanni; Räkköläinen, Jaakko; Salminen, Seppo; Collado, Maria Carmen; Borman, Tuomas; Lahti, Leo; Piirainen, Virpi; Valros, Anna; Heinonen, Mari
- Fewer culturable Lactobacillaceae species identified in faecal samples of pigs performing manipulative behaviour (2024) König Emilia, Heponiemi Paulina, Kivinen Sanni, Räkköläinen Jaakko, Beasley Shea, Borman Tuomas, Collado Maria Carmen, Hukkinen Vilja, Junnila Jouni, Lahti Leo, Norring Marianna, Piirainen Virpi, Salminen Seppo, Heinonen Mari, Valros Anna
- Greengenes2 unifies microbial data in a single reference tree (2024) McDonald Daniel, Jiang Yueyu, Balaban Metin, Cantrell Kalen, Zhu Qiyun, Gonzalez Antonio, Morton James T., Nicolaou Giorgia, Parks Donovan H., Karst Søren M., Albertsen Mads, Hugenholtz Philip, DeSantis Todd, Song Se Jin, Bartko Andrew, Havulinna Aki S., Jousilahti Pekka, Cheng Susan, Inouye Michael, Niiranen Teemu, Jain Mohit, Salomaa Veikko, Lahti Leo, Mirarab Siavash, Knight Rob
- Infant gut microbiota and negative and fear reactivity (2024)
- Development and Psychopathology
Huovinen Venla, Aatsinki Anna-Katariina, Kataja Eeva-Leena, Munukka Eveliina, Keskitalo Anniina, Lamichhane Santosh, Raunioniemi Peppi, Bridgett David J., Lahti Leo, O’Mahony Siobhain M., Dickens Alex, Korja Riikka, Karlsson Hasse, Nolvi Saara, Karlsson Linnea
- Integration of polygenic and gut metagenomic risk prediction for common diseases (2024) Liu Yang, Ritchie Scott C., Teo Shu Mei, Ruuskanen Matti O., Kambur Oleg, Zhu Qiyun, Sanders Jon, Vázquez-Baeza Yoshiki, Verspoor Karin, Jousilahti Pekka, Lahti Leo, Niiranen Teemu, Salomaa Veikko, Havulinna Aki S., Knight Rob, Méric Guillaume, Inouye Michael
- Microbiome confounders and quantitative profiling challenge predicted microbial targets in colorectal cancer development (2024) Tito Raúl Y., Verbandt Sara, Aguirre Vazquez Marta, Lahti Leo, Verspecht Chloe, Lloréns-Rico Verónica, Vieira-Silva Sara, Arts Janine, Falony Gwen, Dekker Evelien, Reumers Joke, Tejpar Sabine, Jeroen Raes
- Multikingdom oral microbiome interactions in early-onset cryptogenic ischemic stroke (2024) Manzoor, Muhammed; Leskelä, Jaakko; Pietiäinen, Milla; Martinez-Majander, Nicolas; Ylikotila, Pauli; Könönen, Eija; Niiranen, Teemu; Lahti, Leo; Sinisalo, Juha; Putaala, Jukka; Pussinen, Pirkko J; Paju, Susanna
- Print culture and economic constraints : A quantitative analysis of book prices in eighteenth-century Britain (2024)
- Explorations in Economic History
Tiihonen, Iiro; Lahti, Leo; Tolonen, Mikko
- Regular Exercise Training Induces More Changes on Intestinal Glucose Uptake from Blood and Microbiota Composition in Leaner Compared to Heavier Individuals in Monozygotic Twins Discordant for BMI (2024) Lietzén, Martin S.; Guzzardi, Maria Angela; Ojala, Ronja; Hentilä, Jaakko; Heiskanen, Marja A.; Honkala, Sanna M.; Lautamäki, Riikka; Löyttyniemi, Eliisa; Kirjavainen, Anna K.; Rajander, Johan; Malm, Tarja; Lahti, Leo; Rinne, Juha O.; Pietiläinen, Kirsi H.; Iozzo, Patricia; Hannukainen, Jarna C.
- Role of Gut Microbiota in Statin-Associated New-Onset Diabetes—a Cross-Sectional and Prospective Analysis of the FINRISK 2002 Cohort (2024)
- Arteriosclerosis, Thrombosis, and Vascular Biology
Koponen Kari, Kambur Oleg, Joseph Bijoy, Ruuskanen Matti O, Jousilahti Pekka, Salido Rodolfo, Brennan Caitriona, Jain Mohit, Meric Guillaume, Inouye Michael, Lahti Leo, Niiranen Teemu, Havulinna Aki S, Knight Rob, Salomaa Veikko
- Shotgun metagenomic analysis of the oral microbiome in gingivitis: a nested case-control study (2024)
- Journal of Oral Microbiology
Manzoor Muhammed, Leskelä Jaakko, Pietiäinen Milla, Martinez-Majander Nicolas, Könönen Eija, Niiranen Teemu, Lahti Leo, Sinisalo Juha, Putaala Jukka, Pussinen Pirkko J, Paju Susanna