Sini Junttila - UTU Research Portal

Sini Junttila

- Docent,
Department of Life Technologies (Faculty of Technology)
- Senior Research Fellow,
Turku Bioscience Centre (Independent units)

simaju@utu.fi

+358 29 450 3756

Tykistökatu 6

Turku

Publications

1 of 4

REACTOR: REgulon Activity analysis and Comparison Tool for single-cell transcriptOmics Research (2026)
- Bioinformatics
Lindén, Markus; Zúñiga Norman, Sebastián I.; Välikangas, Tommi; Junttila, Sini; Suomi, Tomi; Rytkönen, Kalle T; Elo, Laura L.
(A1 Refereed original research article in a scientific journal)
A Metabolite-Based Resistance Mechanism Against Malaria (2025)
- Science
Figueiredo, Ana; Rastogi, Sonia Trikha; Ramos, Susana; Nogueira, Fátima; De Villiers, Katherine; Sousa, António GG; Votborg-Novél, Lasse; von Wedel, Cäcilie; Tober-Lau, Pinkus; Jentho, Elisa; Pagnotta, Sara; Mesquita, Miguel; Cardoso, Silvia; Bortolussi, Giulia; Muro, Andrés F; Tranfield, Erin M; Thibaud, Jessica; Duarte, Denise; Sousa, Ana Laura; Pinto, Sandra N; Kitoko, Jamil; Mombo-Ngoma, Ghyslain; Mischlinger, Johannes; Junttila, Sini; Alenquer, Marta; Amorim, Maria João; Vasavda, Chirag; Bosma, Piter J; Violante, Sara; Drotleff, Bernhard; Paixão, Tiago; Portugal, Silvia; Kurth, Florian; Elo, Laura L; Paul, Bindu D; Martins, Rui; Soares, Miguel P
(A1 Refereed original research article in a scientific journal)
CellRomeR: an R package for clustering cell migration phenotypes from microscopy data (2025)
- Bioinformatics Advances
Kleino, Iivari; Perk, Mats; Sousa, António G G; Linden, Markus; Mathlin, Julia; Giesel, Daniel; Frolovaite, Paulina; Pietilä, Sami; Junttila, Sini; Suomi, Tomi; Elo, Laura L
(A1 Refereed original research article in a scientific journal)
Coralysis enables sensitive identification of imbalanced cell types and states in single-cell data via multi-level integration (2025)
- Nucleic Acids Research
Sousa, António G. G.; Smolander, Johannes; Junttila, Sini; Elo, Laura L.
(A1 Refereed original research article in a scientific journal)
LINC01871 is exclusively expressed in T and NK cells and is highly induced upon CD4+ T cell activation (2025)
- iScience
Kalim, Ubaid Ullah; Shetty, Ankitha; Ranade, Amogh; Rundquist, Olof; Starskaia, Inna; Batkulwar, Kedar; Välikangas, Tommi; Sousa, António G. G.; Hurme, Antti; Kumpulainen, Venla; Viitala, Miro; Kosola, Sakari; Junttila, Sini; Rasool, Omid; Elo, Laura L.; Galande, Sanjeev; Lahesmaa, Riitta
(A1 Refereed original research article in a scientific journal)
Single-cell RNA-seq analysis of longitudinal CD4+ T cell samples reveals cell-type-specific changes during early stages of type 1 diabetes (2025)
- Genome Medicine
Biradar, Rahul; Kalim, Ubaid Ullah; Lönnberg, Tapio; Junttila, Sini; Suomi, Tomi; Norman, Sebastián Zúñiga; Starskaia, Inna; Paulin, Niklas; Mikkola, Lea; Vaarala, Outi; Rasool, Omid; Knip, Mikael; Elo, Laura L.; Lahesmaa, Riitta
(A1 Refereed original research article in a scientific journal)
Sketching T cell atlases in the single‐cell era: challenges and recommendations (2025)
- Immunology and Cell Biology
Bojović, Itana; Sousa, António GG.; Junttila, Sini; Elo, Laura L.
(A2 Refereed review article in a scientific journal )
A proximal enhancer regulates RORA expression during early human Th17 cell differentiation (2024)
- Clinical Immunology
Kalim, Ubaid Ullah; Biradar, Rahul; Junttila, Sini; Khan, Mohd Moin; Tripathi, Subhash; Khan, Meraj Hasan; Smolander, Johannes; Kanduri, Kartiek; Envall, Tapio; Laiho, Asta; Marson, Alexander; Rasool, Omid; Elo, Laura L.; Lahesmaa Riitta
(A1 Refereed original research article in a scientific journal)
ECCB2024: The 23rd European Conference on Computational Biology (2024)
- Bioinformatics
Kukkonen-Macchi, A; Hautaniemi, S; Heil, KF; Heinäniemi, M; Jensen, LJ; Junttila, S; Käll, L; Laiho, A; Maccallum, P; Nykter, M; Persson, B; Suomi, T; Van Den Bossche, T; Nyrönen, TH; Elo, LL
(B1 Non-refereed article in a scientific journal)
Inferring Tree-Shaped Single-Cell Trajectories with Totem (2024)
- Methods in Molecular Biology
Transcriptome Data Analysis Sousa, António GG; Smolander, Johannes; Junttila, Sini; Elo, Laura L.
(A3 Refereed book chapter or chapter in a compilation book)