A1 Refereed original research article in a scientific journal

Unsupervised classification of single-molecule data with autoencoders and transfer learning




AuthorsVladyka A, Albrecht T

PublisherIOP Publishing

Publication year2020

JournalMachine Learning: Science and Technology

Journal name in sourceMachine Learning: Science and Technology

Journal acronymMLST

Article number035013

Volume1

Issue3

eISSN2632-2153

DOIhttps://doi.org/10.1088/2632-2153/aba6f2

Web address https://doi.org/10.1088/2632-2153/aba6f2

Self-archived copy’s web addresshttps://research.utu.fi/converis/portal/Publication/51144754


Abstract

Datasets from single-molecule experiments often reflect a large variety
of molecular behaviour. The exploration of such datasets can be
challenging, especially if knowledge about the data is limited and a
priori assumptions about expected data characteristics are to be
avoided. Indeed, searching for pre-defined signal characteristics is
sometimes useful, but it can also lead to information loss and the
introduction of expectation bias. Here, we demonstrate how Transfer
Learning-enhanced dimensionality reduction can be employed to identify
and quantify hidden features in single-molecule charge transport data,
in an unsupervised manner. Taking advantage of open-access neural
networks trained on millions of seemingly unrelated image data, our
results also show how Deep Learning methodologies can readily be
employed, even if the amount of problem-specific,'own'data is limited.


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Last updated on 2024-26-11 at 19:10